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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EPAWQTRDHLDDPVIGELRNRFGPDAFTVQATRTGVPVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHREGL
PAADFSVFYHLISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRK
DYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRGNEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHH
RGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAM
TPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAA
YGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPF
KADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIP
AAIRGSLVSDLIVYLGSIDFVMSDVDR

The query sequence (length=587) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7p63:C 589 589 0.9966 0.9932 0.9932 0.0 7nyr:D, 7nyu:D, 7nz1:D, 7p64:C, 7p69:C, 7p7c:C, 7p7j:C, 7p7l:C, 7p7m:C, 7z7r:C, 7z7s:C, 7z7t:C, 7z7v:C, 7z80:C, 7z83:C, 7z84:C, 7zc5:C, 7zci:C
2 7p7k:C 568 587 0.9642 0.9965 0.9642 0.0 7p7e:C
3 6i0d:4 384 385 0.2760 0.4219 0.4208 1.97e-109 6i0d:E, 6i1p:E, 3i9v:4, 3iam:4, 3ias:4, 3ias:D, 3ias:M, 3ias:V, 3m9s:4, 3m9s:D, 6q8o:4, 6q8o:E, 6q8w:4, 6q8w:E, 6q8x:4, 6q8x:E, 2ybb:4
4 7arc:D 395 386 0.2777 0.4127 0.4223 3.13e-109 7ard:D
5 7b93:D 430 408 0.2743 0.3744 0.3946 1.63e-104 7ak5:D, 8c2s:D, 8ca3:D, 8ca5:D, 6g2j:D, 6g72:D, 5gpn:Z, 5gup:C, 8iao:D, 8iap:D, 8ib4:D, 8ib5:D, 8ib9:D, 8iba:D, 8ic2:D, 8ic3:D, 5lc5:D, 5ldw:D, 5ldx:D, 5lnk:4, 8olt:D, 8om1:D, 7psa:D, 8pw5:D1, 8pw6:D1, 8pw7:D1, 8q0a:D, 8q0f:D, 8q0m:D, 8q0o:D, 8q0q:D, 8q1y:D, 8q25:D, 8q45:D, 8q46:D, 8q47:D, 8q48:D, 8q49:D, 8q4a:D, 6qa9:S2, 6qc4:S2, 6qc7:S2, 7qsd:D, 7qsk:D, 7qsl:D, 7qsm:D, 7qso:D, 7r41:D, 7r42:D, 7r43:D, 7r44:D, 7r45:D, 7r46:D, 7r47:D, 7r48:D, 7r4c:D, 7r4d:D, 7r4f:D, 7r4g:D, 8rgp:D, 8rgq:D, 8rgr:D, 8rgt:D, 8ud1:1D, 8uep:1D, 8ueq:1D, 8uer:1D, 8ues:1D, 8uet:1D, 8ueu:1D, 8uev:1D, 8uew:1D, 8uex:1D, 8uey:1D, 8uez:1D, 8ugh:1D, 8ugi:1D, 8ugj:1D, 8ugn:1D, 8ugn:5D, 8ugr:1D, 7v2c:Q, 7v2d:Q, 7v2e:Q, 7v2f:Q, 7v2h:Q, 7v2k:Q, 7v2r:Q, 7v30:Q, 7v31:Q, 7v32:Q, 7v33:Q, 7v3m:Q, 7vb7:Q, 7vbn:Q, 7vbz:Q, 7vwj:Q, 7vxp:Q, 7vxu:Q, 7vy8:Q, 7vya:Q, 7vyf:Q, 7vyh:Q, 7vyn:Q, 7vz1:Q, 7vzv:Q, 7vzw:Q, 7w00:Q, 7w0h:Q, 7w0r:Q, 7w0y:Q, 7w1o:Q, 7w1p:Q, 7w1t:Q, 7w1u:Q, 7w1v:Q, 7w1z:Q, 7w20:Q, 7w2k:Q, 7w2l:Q, 7w2r:Q, 7w2u:Q, 7w2y:Q, 7w31:Q, 7w32:Q, 7w35:Q, 7w4c:Q, 7w4d:Q, 7w4e:Q, 7w4f:Q, 7w4g:Q, 7w4j:Q, 7w4k:Q, 7w4l:Q, 7w4m:Q, 7w4n:Q, 7w4q:Q, 5xtb:Q, 7zd6:4, 7zdh:4, 7zdj:4, 7zdm:4, 7zdp:4, 7zeb:4, 6zkc:4, 6zkd:4, 6zke:4, 6zkf:4, 6zkg:4, 6zkh:4, 6zki:4, 6zkj:4, 6zkk:4, 6zkl:4, 6zkm:4, 6zkn:4, 6zko:4, 6zkp:4, 6zkq:4, 6zkr:4, 6zks:4, 6zkt:4, 6zku:4, 6zr2:D, 6ztq:D
6 7zmb:C 441 386 0.2692 0.3583 0.4093 1.47e-102 7zm7:C, 7zmg:C
7 8b9z:D 430 383 0.2641 0.3605 0.4047 2.59e-102 8esz:S2
8 7aqr:D 385 383 0.2658 0.4052 0.4073 1.81e-101 7a23:G, 7a24:G, 7ar7:D, 7ar8:D, 7arb:D, 8bee:D, 8bpx:D, 8bq5:D, 8bq6:D, 8e73:S2, 6x89:S2
9 6rfr:C 438 386 0.2641 0.3539 0.4016 7.93e-100 7o6y:C, 7o71:C, 6rfq:C, 6rfs:C, 6y79:C, 6yj4:D
10 7qsn:D 404 364 0.2419 0.3515 0.3901 4.39e-91 6q9d:S2, 6zk9:4, 6zkv:4
11 8iuf:S2 394 384 0.2521 0.3756 0.3854 1.64e-89 8j9h:S2, 8j9i:S2, 8j9j:S2
12 8qby:D 410 386 0.2470 0.3537 0.3756 2.38e-89
13 8e9h:D 407 403 0.2658 0.3833 0.3871 4.41e-89 8e9g:D
14 8b6f:AE 441 419 0.2249 0.2993 0.3150 2.06e-60 8bqs:AE
15 6cfw:L 374 388 0.1959 0.3075 0.2964 9.79e-46
16 7z0s:E 532 560 0.2487 0.2744 0.2607 1.33e-43 7z0t:E
17 8ugp:1D 221 149 0.0954 0.2534 0.3758 4.62e-22
18 8ugp:1D 221 107 0.0596 0.1584 0.3271 1.04e-08
19 3mcr:A 154 105 0.0664 0.2532 0.3714 3.54e-14
20 4wz7:G 133 45 0.0409 0.1805 0.5333 7.43e-12
21 5b3p:A 134 67 0.0494 0.2164 0.4328 2.70e-10
22 4c3o:A 583 94 0.0375 0.0377 0.2340 0.002 4c3o:C, 4c3o:E
23 5a4f:L 581 94 0.0375 0.0379 0.2340 0.005 5a4f:M, 5a4i:L, 5a4i:M, 5a4m:L, 5a4m:M, 5adu:L, 5adu:M, 6fpi:L, 6fpi:M, 6fpo:L, 6fpo:M, 6fpw:L, 6fpw:M, 6g7r:L, 6g7r:M, 6g94:L, 6g94:M, 6g94:J, 6g94:K, 6gal:L, 6gal:M, 4gd3:L, 4gd3:M, 4gd3:J, 4gd3:K, 5jrd:L, 5jrd:M, 5lmm:L, 5lmm:M, 5lry:L, 5lry:M, 6rp2:L, 6rp2:M, 4ue3:LLL, 4ue3:MMM, 3uqy:L, 3uqy:M, 3usc:L, 3usc:M, 3use:L, 3use:M
24 6qgr:A 437 143 0.0562 0.0755 0.2308 0.012 6qgt:A, 6qii:A
25 4ci0:A 385 141 0.0545 0.0831 0.2270 0.94 4omf:A
26 5cqq:B 75 40 0.0290 0.2267 0.4250 1.00 5cqq:A
27 3ayx:A 595 126 0.0409 0.0403 0.1905 1.3 3ayx:C, 3ayz:A, 3ayz:C, 5y34:A, 5y34:C
28 6iun:B 692 101 0.0477 0.0405 0.2772 4.9 6iun:A
29 5odc:F 447 153 0.0545 0.0716 0.2092 5.6 5odc:L, 5odh:F, 5odh:L, 5odi:F, 5odi:L, 5odq:F, 5odq:L, 5odr:F, 5odr:L
30 4a6g:A 368 108 0.0579 0.0924 0.3148 5.9 4a6g:B, 4a6g:C, 4a6g:D, 5fjo:A, 5fjo:B, 5fjp:A, 5fjp:B, 5fjp:C, 5fjp:D, 5fjr:A, 5fjr:B, 5fjr:C, 5fjr:D, 5fjt:A, 5fjt:B, 5fjt:C, 5fjt:D, 5fju:A, 5fju:B, 5fju:C, 5fju:D, 7s8w:A, 7s8w:B, 7s8w:C, 7s8w:D, 1sja:A, 1sja:B, 1sja:C, 1sja:D, 1sjb:A, 1sjb:B, 1sjb:C, 1sjb:D, 1sjc:A, 1sjc:B, 1sjc:C, 1sjc:D, 1sjd:A, 1sjd:B, 1sjd:C, 1sjd:D
31 6git:A 507 148 0.0579 0.0671 0.2297 6.7 6giz:A, 6gj2:A, 6gj9:A, 6gja:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218