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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EPAEIKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNV
RTRLEILEKGLAT

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4u7i:A 93 93 1.0000 1.0000 1.0000 1.21e-64
2 7s7j:A 84 85 0.3441 0.3810 0.3765 5.99e-09
3 5tzy:A 418 49 0.1935 0.0431 0.3673 0.048
4 5w93:A 133 75 0.2043 0.1429 0.2533 0.51 5w93:B, 5w93:C
5 6zfz:A 446 57 0.2043 0.0426 0.3333 0.97 5cxv:A, 6wjc:A, 6zg4:A, 6zg9:A
6 4v5o:AE 230 45 0.1075 0.0435 0.2222 1.7 4bts:AE, 4bts:BE, 4bts:CE, 4bts:DE, 4v5o:BE
7 5ee7:A 416 43 0.1828 0.0409 0.3953 1.9
8 4xes:A 471 62 0.2043 0.0403 0.3065 2.1 4buo:B, 8fmz:A, 8fn0:A, 8fn1:A, 7l0p:C, 7l0q:C, 7l0r:C, 7l0s:C, 4xee:A
9 8d97:A 1600 53 0.2151 0.0125 0.3774 2.3
10 7y82:A 1341 53 0.2151 0.0149 0.3774 2.4
11 8gna:A 1188 53 0.2151 0.0168 0.3774 2.4
12 8d8n:B 1256 53 0.2151 0.0159 0.3774 2.5 8d9e:B, 8d9i:B, 7y81:A
13 7y84:A 1242 52 0.2151 0.0161 0.3846 2.6 7x7a:A, 7x7r:A, 7xc7:A, 7y83:A, 7y85:A
14 7y80:A 1218 52 0.2151 0.0164 0.3846 2.7 8gu6:A
15 7xss:B 1282 52 0.2151 0.0156 0.3846 2.7 8d9f:B, 8d9h:B, 7x8a:A, 7xso:A, 7xsp:B, 7xt4:B
16 7y8t:A 1298 53 0.2151 0.0154 0.3774 2.8 8d9g:B, 7xsq:A, 7xsr:B, 7y8y:A
17 8jwz:A 450 56 0.1935 0.0400 0.3214 3.0 3eml:A, 8jwy:A, 3qak:A, 5wf5:A, 5wf6:A
18 8w1v:A 441 53 0.1828 0.0385 0.3208 3.1 8w1v:B
19 8gji:A 167 32 0.1398 0.0778 0.4062 6.1
20 8bvf:B 403 30 0.1183 0.0273 0.3667 6.6 8bvf:A
21 6ol9:A 416 46 0.1613 0.0361 0.3261 8.1
22 4ayg:A 1028 48 0.1398 0.0126 0.2708 8.9 4ayg:B, 3hz3:A, 3klk:A, 3kll:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218