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BioLiP
>protein
ENTSENRAQVAARQHNRKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPDWVWT
DIQIFETQDPNWFWVECRGEGAIVFPGYPRGQYRNHFLHSFRFENGLIKEQREFMNPCEQFRSLGIEVPEVRRDGL

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3b4p:B 158 156 1.0000 0.9873 1.0000 1.62e-116 3b4p:A, 3cnm:A, 3cnm:B, 3dzl:A, 3dzl:B, 3jum:A, 3jum:B, 3jun:A, 3jun:B, 3juo:A, 3juo:B, 3jup:A, 3jup:B, 3juq:A, 3juq:B
2 5bvb:A 130 112 0.2051 0.2462 0.2857 6.49e-06 5bvb:B, 5bvb:C, 5bvb:D
3 4j8t:A 128 111 0.1987 0.2422 0.2793 3.13e-05 4j8t:B, 4j8t:C, 4j8t:D, 4j9a:A, 4j9a:B, 4j9a:C, 4j9a:D, 4j9a:E, 4j9a:F, 4j9a:H
4 4j9a:I 111 105 0.1795 0.2523 0.2667 0.098 4j9a:G
5 5lsm:A 339 27 0.0769 0.0354 0.4444 0.84 5lsm:B, 5lsm:C, 5lsm:D, 5lsm:E, 5lsm:F, 5lsm:G, 5lsm:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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