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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ENPLREEEWARLNETVIQVARRSLVGRRILDIYGPLGAGVQTVPYDEFQGVSPGAVDIVGEQETAMVFTDARKFKTIPII
YKDFLLHWRDIEAARTHNMPLDVSAAAGAAALCAQQEDELIFYGDARLGYEGLMTANGRLTVPLGDWTSPGGGFQAIVEA
TRKLNEQGHFGPYAVVLSPRLYSQLHRIYEKTGVLEIETIRQLASDGVYQSNRLRGESGVVVSTGRENMDLAVSMDMVAA
YLGASRMNHPFRVLEALLLRIKHPDAICTL

The query sequence (length=270) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8vjo:B 278 270 1.0000 0.9712 1.0000 0.0 9b9q:A, 9b9q:B, 9b9q:C, 7s2t:A, 7s2t:B, 7s2t:C, 7s4q:A, 7s4q:B, 7s4q:C, 8tk7:B, 8tk7:A, 8tk7:C, 8vjo:A, 8vjo:C
2 6nj8:B 277 270 0.5074 0.4946 0.5074 1.40e-93 6nj8:C, 6nj8:D
3 7oe2:A 266 272 0.2481 0.2519 0.2463 1.30e-12 7oe2:B, 7oe2:C, 7oe2:D, 7oe2:E, 7oeu:A, 7oeu:B, 7oeu:C, 7oeu:D, 7oeu:E
4 7kq5:A 265 270 0.2296 0.2340 0.2296 2.12e-11 3dkt:A, 3dkt:B, 3dkt:C, 3dkt:D, 3dkt:E, 3dkt:F, 3dkt:G, 3dkt:H, 3dkt:I, 3dkt:J, 7lik:A, 7lis:A, 7lit:A, 7mu1:A, 6wkv:A, 6wkv:f, 6wkv:B, 6wkv:Q, 6wkv:C, 6wkv:I, 6wkv:D, 6wkv:H, 6wkv:s, 6wkv:E, 6wkv:v, 6wkv:F, 6wkv:W, 6wkv:G, 6wkv:V, 6wkv:o, 6wkv:P, 6wkv:J, 6wkv:3, 6wkv:M, 6wkv:Z, 6wkv:S, 6wkv:N, 6wkv:i, 6wkv:O, 6wkv:l, 6wkv:e, 6wkv:R, 6wkv:T, 6wkv:p, 6wkv:2, 6wkv:X, 6wkv:8, 6wkv:Y, 6wkv:b, 6wkv:0, 6wkv:4, 6wkv:L, 6wkv:1, 6wkv:5, 6wkv:k, 6wkv:K, 6wkv:6, 6wkv:c, 6wkv:7, 6wkv:U, 6wkv:a, 6wkv:9, 6wkv:q, 6wkv:j, 6wkv:d, 6wkv:x, 6wkv:u, 6wkv:h, 6wkv:m, 6wkv:t, 6wkv:g, 6wkv:n, 6wkv:w, 6wkv:r
5 8u51:A 267 272 0.2370 0.2397 0.2353 5.21e-08
6 4m7x:A 273 26 0.0481 0.0476 0.5000 6.3 6avp:A, 6avp:C, 6avp:B, 6avp:D, 6awg:A, 6awg:B, 6awg:C, 6awg:D, 6awh:A, 6awh:B, 6awh:C, 6awh:D, 6awi:A, 6awi:B, 6awi:C, 6awi:D, 6awj:A, 6awj:B, 6awj:C, 6awj:D, 6ebv:A, 6ebv:B, 6ebv:C, 6ebv:D, 5elz:A, 2ews:A, 2ews:B, 5jic:A, 4m7y:A, 4m7y:B, 4nb4:A, 4nb4:B, 4nb4:C, 4nb4:D, 4nb4:E, 4nb4:F, 4nb4:G, 4nb4:H
7 1k1x:A 636 91 0.0667 0.0283 0.1978 8.4 1k1w:A, 1k1x:B, 1k1y:A, 1k1y:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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