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BioLiP
>protein
ENMYVNKVWVQCENENCLKWRLLSSEDSAKVDHDEPWYCFMNTDSRYNNCSISEED

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4o62:B 57 56 1.0000 0.9825 1.0000 9.77e-37 4o62:A, 4o62:C, 4z0o:A, 4z0r:B, 4z0r:A, 4z0r:C
2 2e61:A 69 48 0.4286 0.3478 0.5000 1.20e-07 2rr4:A
3 6qxz:A 79 52 0.3036 0.2152 0.3269 3.00e-07
4 2l7p:A 100 48 0.3036 0.1700 0.3542 1.52e-06 5yvx:A
5 6o5w:A 57 50 0.3571 0.3509 0.4000 1.01e-05
6 5ix1:A 414 51 0.3750 0.0507 0.4118 4.91e-05
7 6o1e:A 431 51 0.3750 0.0487 0.4118 9.51e-05 5ix1:B, 5ix2:A, 5ix2:B, 4qq4:A, 4qq4:B, 5svi:A, 5svi:B, 5svx:A, 5svy:A
8 7xe1:A 751 49 0.3036 0.0226 0.3469 0.009 4fwe:A, 4fwf:A, 4fwj:A, 4fwj:B, 4gu0:A, 4gu0:C, 4gu0:B, 4gu0:D, 4gu1:A, 4gu1:B, 4gur:A, 4gus:A, 4gut:A, 4guu:A, 4hsu:A, 6r1u:K, 6r25:K, 7xe1:B, 7xe2:A, 7xe2:B, 7xe3:A, 7xe3:B
9 5ofb:B 541 46 0.2857 0.0296 0.3478 0.015 5of9:A, 5of9:B, 5ofa:B, 5ofa:A, 5ofb:A
10 8t3p:A 477 23 0.1607 0.0189 0.3913 3.1 8t3p:B
11 8pvs:A 731 48 0.2143 0.0164 0.2500 8.0 8pvs:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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