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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ENKDMCPICKTDRYLSPDVKFLVNPECYHRICESCVDRIFSLGPAQCPYKGCDKILRKNKFKTQIFDDVEVEKEVDIRKR
VFNVFNKTIDDFNGDLVEYNKYLEEVEDIIYKLDHGIDVAKTEEKLRTYEELNKQLIM

The query sequence (length=138) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6gym:3 138 138 1.0000 1.0000 1.0000 1.45e-98 8cen:3, 8ceo:3, 7ml0:3, 7ml1:3, 7ml2:3, 7ml3:3, 7o4i:3, 7o4j:3, 7o4k:3, 7o4l:3, 7o72:3, 7o73:3, 7o75:3, 5oqj:3, 5oqm:3, 7zs9:3, 7zsa:3, 7zsb:3
2 7nvr:3 214 132 0.4348 0.2804 0.4545 7.28e-34
3 7egb:0 236 132 0.4348 0.2542 0.4545 1.31e-33 7egc:0
4 7lbm:d 275 132 0.4348 0.2182 0.4545 2.03e-33 8byq:7
5 7enc:0 306 132 0.4348 0.1961 0.4545 3.62e-33 1g25:A, 8gxq:HD, 8gxs:HD, 6nmi:H, 7nvw:3, 7nvx:3, 7nvy:3, 7nvz:3, 8wak:0, 8wal:0, 8wan:0, 8wao:0, 8wap:0, 8waq:0, 8war:0, 8was:0
6 2ct2:A 88 74 0.1884 0.2955 0.3514 0.002 5fey:A, 5fey:B
7 7bbd:B 160 43 0.1087 0.0938 0.3488 0.043 8a58:C, 8a58:D, 8c07:I, 8f1f:C, 8f1f:c, 6fga:A, 6fga:B, 6fga:C, 6fga:D, 6fga:E, 6fga:F, 6fga:G, 6fga:H, 5m93:B, 5m93:C, 7nbb:C, 5o44:E, 6s53:B, 6s53:A, 6s53:H, 6s53:G, 3zlz:B
8 5olm:B 132 75 0.1522 0.1591 0.2800 0.12 5jpx:A, 5olm:A
9 5tte:B 442 75 0.1667 0.0520 0.3067 1.0 7b5m:H, 2m9y:A, 1wd2:A
10 7b5l:H 423 71 0.1522 0.0496 0.2958 1.2 7b5n:H, 4kc9:A, 5udh:A
11 1z6u:A 115 59 0.1304 0.1565 0.3051 1.2 1z6u:B
12 2eci:A 86 75 0.1522 0.2442 0.2800 1.4
13 6wi7:A 206 44 0.1087 0.0728 0.3409 1.4 2ckl:A, 8grm:M, 2h0d:A, 7nd1:H, 8pp7:K, 8pp7:M, 4r8p:K, 4r8p:M, 3rpg:B, 6wi8:A, 6wi8:B
14 4kbl:A 395 71 0.1522 0.0532 0.2958 1.7 4kbl:B, 5udh:B
15 4r8p:L 254 44 0.1087 0.0591 0.3409 1.9 2ckl:B, 8grm:N, 2h0d:B, 7nd1:A, 8pp7:L, 8pp7:N, 4r8p:N, 3rpg:C, 4s3o:B, 4s3o:E
16 2ecy:A 66 29 0.0870 0.1818 0.4138 1.9
17 1cl1:B 392 26 0.0870 0.0306 0.4615 2.3 1cl1:A, 1cl2:A, 1cl2:B, 2fq6:A, 2fq6:B, 2gqn:A, 2gqn:B, 4itx:A, 4itx:B
18 3i4l:A 524 44 0.0870 0.0229 0.2727 2.6 3i73:A
19 6nyt:A 135 54 0.1159 0.1185 0.2963 2.9
20 3knv:A 123 22 0.0725 0.0813 0.4545 3.7
21 6ox1:B 484 63 0.1304 0.0372 0.2857 7.1 6ict:A, 6ict:B, 6ict:C, 6ict:D, 6icv:A, 6icv:B, 6jat:A, 6jat:C, 7lms:A, 6mbj:A, 6mbj:B, 6mbk:A, 6mbk:B, 6mbl:A, 6ox0:A, 6ox0:B, 6ox1:A, 6ox2:A, 6ox2:B, 6ox3:A, 6ox3:B, 6ox4:A, 6ox4:B, 6ox5:A, 3smt:A, 6v62:A, 6v63:A, 6v63:B, 7w28:A, 7w29:A, 6wk1:A, 6wk1:B, 6wk2:A, 6wk2:D, 8x77:B
22 6vu9:A 631 86 0.1594 0.0349 0.2558 7.3
23 3hcs:A 157 75 0.1522 0.1338 0.2800 8.7 3hcs:B, 3hct:A, 3hcu:A, 3hcu:C, 8hz2:A, 8hz2:B, 2jmd:A, 7l3l:B, 7l3l:D
24 5vo0:D 159 75 0.1449 0.1258 0.2667 8.9 5vnz:A, 5vnz:D, 5vo0:A
25 7v1l:B 221 60 0.1014 0.0633 0.2333 9.6 7v6p:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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