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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ENIVFRVISTTGQIPIRDFSADISQVLKEKRSIKKVWTFGRNPACDYHLGNILPVSNKHFQILLGEDGNLLLNDISTNGT
WLNGQKVEKNSYQLLSQGDEITVRTDPTGTILSLVIFINDKFKQSL

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6c4u:B 128 126 1.0000 0.9844 1.0000 3.15e-90 6c4u:A, 6c4u:C, 6c4u:D, 6c4u:F, 6c4u:E
2 5t2s:A 247 126 0.8810 0.4494 0.8810 2.99e-74 5t2s:C
3 5xzv:A 375 126 0.8571 0.2880 0.8571 7.17e-67 2a0t:A, 1g6g:A, 1g6g:B, 1j4p:A, 1j4q:A, 2jqi:A, 1k3n:A, 1k3q:A, 5xzv:B
4 1lgp:A 113 69 0.2143 0.2389 0.3913 4.74e-06
5 2jql:A 141 74 0.1905 0.1702 0.3243 0.026
6 5yyz:A 102 98 0.2222 0.2745 0.2857 0.15
7 7eip:A 966 23 0.1032 0.0135 0.5652 2.8 7eiq:A, 7eir:A, 7eis:A, 7yke:A
8 2pie:A 132 70 0.1667 0.1591 0.3000 3.9
9 1v9n:A 348 37 0.1111 0.0402 0.3784 4.0
10 6bcu:A 2204 60 0.1587 0.0091 0.3333 6.5 6bcu:B, 6bcx:A, 6bcx:B, 4drh:B, 4drh:E, 4dri:B, 4drj:B, 8er6:B, 8er6:D, 8er6:F, 8er7:B, 8er7:D, 8er7:F, 8era:A, 9f44:A, 9f44:B, 9f45:A, 9f45:B, 1fap:B, 2fap:B, 3fap:B, 4fap:B, 5flc:B, 5flc:F, 5gpg:B, 4jsp:B, 4jsp:A, 4jsv:B, 4jsv:A, 4jsx:B, 4jsx:A, 4jt5:B, 4jt5:A, 4jt6:B, 4jt6:A, 6m4u:B, 6m4u:F, 6m4w:G, 6m4w:H, 6m4w:I, 1nsg:B, 7pe7:B, 7pe7:A, 7pe8:A, 7pe9:A, 7pea:B, 7pea:A, 7peb:A, 7pec:A, 8ppz:B, 7uxc:A, 7uxh:A, 7uxh:C, 5wbh:C, 5wbh:D, 5wbu:B, 5wbu:A, 6zwo:B
11 8rch:A 2036 60 0.1587 0.0098 0.3333 6.5 8rch:B, 8rck:B, 8rcn:B
12 4qdg:B 302 57 0.1508 0.0629 0.3333 6.6 4qdg:A
13 6zwm:B 2185 60 0.1587 0.0092 0.3333 6.6 6zwm:A
14 5olt:A 383 29 0.0873 0.0287 0.3793 8.0 5ojh:A
15 1a8p:A 257 21 0.0794 0.0389 0.4762 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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