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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ENITQWNLQDNGTEGIQRAMFQRGVNRSLKGIWPEKICTGVPSHLATDTELKAIHGMMDASEKTNYTCCRLQRHEWNKHG
WCNWYNIEPWILLMNKTQANLTEGRECAVTCRYDRDSDLNVVTQARDSPTPLTGCKKGKNFSFAGILVQGPCNF

The query sequence (length=154) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4dw4:B 163 157 0.9935 0.9387 0.9745 5.76e-114 4dvl:A, 4dvl:B, 4dvn:B, 4dvn:A, 4dw3:A, 4dw3:B, 4dw4:A, 4dw5:A, 4dw5:B, 4dw7:A, 4dw7:B, 4dwa:A, 4dwa:B, 4dwc:A
2 1t5j:A 301 40 0.0844 0.0432 0.3250 0.68
3 6cnh:A 321 63 0.1104 0.0530 0.2698 2.6
4 4za2:D 247 39 0.0974 0.0607 0.3846 3.2
5 2ea1:A 245 68 0.1039 0.0653 0.2353 4.6 2pqx:A, 2pqy:A, 2z70:A
6 1i94:K 123 60 0.1234 0.1545 0.3167 4.9 5a9z:BO, 5aa0:BO, 4aqy:K, 7azo:S11A, 7azo:S11B, 7azs:S11A, 7azs:S11B, 9b00:1k, 9b00:2k, 4b3m:K, 4b3r:K, 4b3s:K, 4b3t:K, 6b4v:TA, 6b4v:XC, 6boh:UA, 6boh:ZC, 6bok:SA, 6bok:VC, 5br8:K, 6buw:QK, 6buw:XK, 6bz6:QK, 6bz6:XK, 6bz7:QK, 6bz7:XK, 6bz8:QK, 6bz8:XK, 6c5l:AK, 6c5l:CK, 6cae:1k, 6cae:2k, 6cao:K, 6cap:K, 6caq:K, 6car:K, 6cas:K, 6cfj:1k, 6cfj:2k, 6cfk:1k, 6cfk:2k, 6cfl:1k, 6cfl:2k, 8cvj:1k, 8cvj:2k, 8cvk:1k, 8cvk:2k, 8cvl:1k, 8cvl:2k, 5czp:XK, 5czp:QK, 6czr:1k, 6czr:2k, 5d8b:LA, 5d8b:HC, 5dfe:XK, 5dfe:QK, 5dox:1k, 5dox:2k, 5doy:1k, 5doy:2k, 4dr1:K, 4dr2:K, 4dr3:K, 4dr4:K, 4dr5:K, 4dr6:K, 4dr7:K, 6dti:K, 4duy:K, 4duz:K, 7dug:K, 7duh:K, 7dui:K, 7duj:K, 7duk:K, 7dul:K, 4dv0:K, 4dv1:K, 4dv2:K, 4dv3:K, 4dv4:K, 4dv5:K, 4dv6:K, 4dv7:K, 2e5l:K, 5e7k:2I, 5e7k:2A, 5e81:2I, 5e81:2A, 8ekb:1k, 8ekb:2k, 5el4:2I, 5el4:2A, 5el5:2I, 5el5:2A, 5el6:2I, 5el6:2A, 5el7:2I, 5el7:2A, 8ev6:1k, 8ev6:2k, 8ev7:1k, 8ev7:2k, 2f4v:K, 5f8k:1k, 5f8k:2k, 8fc1:1k, 8fc1:2k, 8fc2:1k, 8fc2:2k, 8fc3:1k, 8fc3:2k, 8fc4:1k, 8fc4:2k, 8fc5:1k, 8fc5:2k, 8fc6:1k, 8fc6:2k, 5fdu:1k, 5fdu:2k, 5fdv:1k, 5fdv:2k, 1fjg:K, 6fkr:1k, 6fkr:2k, 8fom:QK, 8fom:XK, 8fon:QK, 8fon:XK, 8g29:1k, 8g29:2k, 8g2a:1k, 8g2a:2k, 8g2b:1k, 8g2b:2k, 8g2c:1k, 8g2c:2k, 8g2d:1k, 8g2d:2k, 4gkj:K, 4gkk:K, 6gsj:2I, 6gsj:2A, 6gsk:2I, 6gsk:2A, 6gsl:2I, 6gsl:2A, 6gzq:K2, 6gzx:K3, 6gzx:K4, 6gzz:K3, 6gzz:K4, 5hau:1k, 5hau:2k, 5hcp:1k, 5hcp:2k, 5hcq:1k, 5hcq:2k, 5hcr:1k, 5hcr:2k, 5hd1:1k, 5hd1:2k, 2hhh:K, 1hnw:K, 1hnx:K, 1hnz:K, 1hr0:K, 1i95:K, 1i96:K, 1i97:K, 1ibk:K, 1ibl:K, 1ibm:K, 5ib7:2I, 5ib7:2A, 5ib8:2I, 5ib8:2A, 5ibb:2I, 5ibb:2A, 5imq:O, 5imr:O, 5iwa:K, 5j30:QK, 5j30:XK, 5j3c:QK, 5j3c:XK, 5j4b:1k, 5j4b:2k, 5j4c:1k, 5j4c:2k, 5j4d:TA, 5j4d:YC, 1j5e:K, 5j8b:k, 4ji0:K, 4ji1:K, 4ji2:K, 4ji3:K, 4ji4:K, 4ji5:K, 4ji6:K, 4ji7:K, 4ji8:K, 7jql:1k, 7jql:2k, 7jqm:1k, 7jqm:2k, 4jv5:K, 4jya:K, 4k0k:K, 4khp:K, 4kvb:K, 4l47:QK, 4l47:XK, 4l71:QK, 4l71:XK, 4lel:QK, 4lel:XK, 4lf4:K, 4lf5:K, 4lf6:K, 4lf7:K, 4lf8:K, 4lf9:K, 4lfa:K, 4lfb:K, 4lfc:K, 4lfz:QK, 4lfz:XK, 7lh5:AK, 7lh5:CK, 5lmn:K, 5lmo:K, 5lmp:K, 5lmq:K, 5lmr:K, 5lms:K, 5lmt:K, 5lmu:K, 5lmv:K, 4lnt:QK, 4lnt:XK, 4lsk:QK, 4lsk:XK, 4lt8:QK, 4lt8:XK, 7md7:1k, 7md7:2k, 6mkn:K, 6mpf:K, 6mpi:K, 6n1d:AS11, 6n1d:BS11, 1n32:K, 1n33:K, 1n34:K, 1n36:K, 6n9e:1k, 6n9e:2k, 6n9f:1k, 6n9f:2k, 5ndj:2I, 5ndj:2A, 5ndk:2I, 5ndk:2A, 6nd5:1k, 6nd5:2k, 6nd6:1k, 6nd6:2k, 6ndk:QK, 6ndk:XK, 6nsh:QK, 6nsh:XK, 6nta:QK, 6nta:XK, 6nuo:QK, 6nuo:XK, 6nwy:QK, 6nwy:XK, 4nxm:K, 4nxn:K, 6ny6:K, 6o3m:QK, 6o3m:XK, 6o97:1k, 6o97:2k, 6of1:1k, 6of1:2k, 6of6:QK, 6of6:XK, 6oj2:QK, 6oj2:XK, 6ope:QK, 6ope:XK, 6ord:QK, 6ord:XK, 6osi:QK, 6osi:XK, 3oto:K, 5ot7:J, 6otr:QK, 6otr:XK, 4ox9:K, 6oxa:QK, 6oxa:XK, 6oxi:QK, 6oxi:XK, 4p6f:QK, 4p6f:XK, 4p70:QK, 4p70:XK, 6q95:p, 6qnq:2I, 6qnq:2A, 6qnr:2I, 6qnr:2A, 7rq8:1k, 7rq8:2k, 7rq9:1k, 7rq9:2k, 7rqa:1k, 7rqa:2k, 7rqb:1k, 7rqb:2k, 7rqc:1k, 7rqc:2k, 7rqd:1k, 7rqd:2k, 7rqe:1k, 7rqe:2k, 3t1h:K, 3t1y:K, 8t8b:1k, 8t8b:2k, 8t8c:1k, 8t8c:2k, 4tua:QK, 4tua:XK, 4tub:QK, 4tub:XK, 4tuc:QK, 4tuc:XK, 4tud:QK, 4tud:XK, 4tue:QK, 4tue:XK, 7u2h:1k, 7u2h:2k, 7u2i:1k, 7u2i:2k, 7u2j:1k, 7u2j:2k, 6ucq:1k, 6ucq:2k, 8ud6:1k, 8ud6:2k, 8ud7:1k, 8ud7:2k, 8ud8:1k, 8ud8:2k, 6uo1:1k, 6uo1:2k, 5uq7:k, 5uq8:k, 2uu9:K, 2uua:K, 2uub:K, 2uuc:K, 8uvr:1k, 8uvr:2k, 8uvs:1k, 8uvs:2k, 2uxb:K, 2uxc:K, 2uxd:K, 7v2l:K, 7v2m:K, 7v2n:K, 7v2o:K, 7v2p:K, 7v2q:K, 4v49:AK, 4v4a:AK, 4v4g:AK, 4v4g:CK, 4v4g:EK, 4v4g:GK, 4v4g:IK, 4v4i:l, 4v4j:l, 4v4p:BN, 4v4r:AK, 4v4s:AK, 4v4t:AK, 4v4x:AN, 4v4y:AN, 4v4z:AN, 4v51:AK, 4v51:CK, 4v5a:AK, 4v5a:CK, 4v5c:AK, 4v5c:CK, 4v5d:AK, 4v5d:CK, 4v5e:AK, 4v5e:CK, 4v5f:AK, 4v5f:CK, 4v5g:AK, 4v5g:CK, 4v5j:AK, 4v5j:CK, 4v5k:AK, 4v5k:CK, 4v5l:AK, 4v5m:AK, 4v5n:AK, 4v5p:AK, 4v5p:CK, 4v5q:AK, 4v5q:CK, 4v5r:AK, 4v5r:CK, 4v5s:AK, 4v5s:CK, 4v63:AK, 4v63:CK, 4v67:AK, 4v67:CK, 4v68:AK, 4v6a:AK, 4v6a:CK, 4v6f:BN, 4v6f:CN, 4v6g:AN, 4v6g:CN, 4v7j:Ak, 4v7j:Bk, 4v7k:Ak, 4v7k:Bk, 4v7l:AK, 4v7l:CK, 4v7m:AK, 4v7m:CK, 4v7p:AK, 4v7p:DK, 4v7w:AK, 4v7w:CK, 4v7x:AK, 4v7x:CK, 4v7y:AK, 4v7y:CK, 4v7z:AK, 4v7z:CK, 4v83:AK, 4v83:CK, 4v84:AK, 4v84:CK, 4v87:BN, 4v87:CN, 4v8a:CK, 4v8a:DK, 4v8b:AN, 4v8b:CN, 4v8c:CN, 4v8c:DN, 4v8d:AN, 4v8d:CN, 4v8e:BN, 4v8e:DN, 4v8f:BN, 4v8f:CN, 4v8g:AK, 4v8g:CK, 4v8h:AK, 4v8h:CK, 4v8i:AK, 4v8i:CK, 4v8j:AK, 4v8j:CK, 4v8n:AK, 4v8n:CK, 4v8o:AK, 4v8q:BK, 4v8u:AK, 4v8u:CK, 4v8x:AK, 4v8x:CK, 5v8i:1k, 5v8i:2k, 4v90:AK, 4v95:AK, 4v95:CK, 4v97:AK, 4v97:CK, 4v9a:AN, 4v9a:CN, 4v9b:AN, 4v9b:CN, 4v9h:AK, 4v9i:AK, 4v9i:CK, 4v9j:AK, 4v9j:CK, 4v9k:AK, 4v9k:CK, 4v9l:AK, 4v9l:CK, 4v9m:AK, 4v9m:CK, 4v9n:AK, 4v9n:CK, 4v9q:BK, 4v9q:DK, 4v9r:AK, 4v9r:CK, 4v9s:AK, 4v9s:CK, 5vp2:1k, 5vp2:2k, 5vpo:QK, 5vpo:XK, 5vpp:QK, 5vpp:XK, 2vqe:K, 2vqf:K, 8vtu:1k, 8vtu:2k, 8vtv:1k, 8vtv:2k, 8vtw:1k, 8vtw:2k, 8vtx:1k, 8vtx:2k, 8vty:1k, 8vty:2k, 1vvj:QK, 1vvj:XK, 1vy4:AK, 1vy4:CK, 1vy5:AK, 1vy5:CK, 1vy6:AK, 1vy6:CK, 1vy7:AK, 1vy7:CK, 4w29:AK, 4w29:CK, 4w2e:k, 4w2f:AK, 4w2f:CK, 4w2g:AK, 4w2g:CK, 4w2h:AK, 4w2h:CK, 4w2i:AK, 4w2i:CK, 4w4g:QK, 4w4g:XK, 5w4k:1k, 5w4k:2k, 5wis:1k, 5wis:2k, 5wit:1k, 5wit:2k, 5wnp:K, 5wnq:K, 5wnr:K, 5wns:K, 5wnt:K, 5wnu:K, 5wnv:K, 4wpo:BK, 4wpo:DK, 4wq1:2I, 4wq1:2A, 4wqf:BK, 4wqf:DK, 4wqr:2I, 4wqr:2A, 4wqu:BK, 4wqu:DK, 4wqy:BK, 4wqy:DK, 4wr6:2I, 4wr6:2A, 4wra:2I, 4wra:2A, 4wro:2I, 4wsd:2I, 4wsd:2A, 4wsm:2I, 4wsm:2A, 4wt1:2I, 4wt1:2A, 4wt8:AK, 4wt8:BK, 4wu1:2I, 4wu1:2A, 4wzd:2I, 4wzd:2A, 4wzo:2I, 4wzo:2A, 4x62:K, 4x64:K, 4x65:K, 4x66:K, 4xej:AS11, 4xej:BS11, 6xhv:1k, 6xhv:2k, 6xhw:1k, 6xhw:2k, 6xhx:1k, 6xhx:2k, 6xhy:1k, 6xhy:2k, 1xmo:K, 1xmq:K, 1xnq:K, 1xnr:K, 6xqd:1k, 6xqd:2k, 6xqe:1k, 6xqe:2k, 4y4o:1k, 4y4o:2k, 4y4p:1k, 4y4p:2k, 4yhh:K, 4ypb:QK, 4ypb:XK, 4yy3:K, 4yzv:QK, 4yzv:XK, 4z3s:1k, 4z3s:2k, 4z8c:1k, 4z8c:2k, 4zer:1k, 4zer:2k, 5zlu:P, 2zm6:K, 4zsn:QK, 4zsn:XK
7 6xyw:Aq 106 55 0.1039 0.1509 0.2909 4.9
8 8h1l:B 423 29 0.0779 0.0284 0.4138 6.2 8h1l:C, 8h1n:A
9 3wmw:B 278 81 0.1429 0.0791 0.2716 8.6 3wmw:A
10 1g8x:A 1009 57 0.1169 0.0178 0.3158 8.8 1g8x:B
11 1jwy:A 1039 57 0.1169 0.0173 0.3158 8.8 4ae3:A, 2aka:A, 7b19:A, 7b1a:A, 3bz7:A, 3bz8:A, 3bz9:A, 1d0x:A, 1d0y:A, 1d0z:A, 1d1a:A, 1d1b:A, 1d1c:A, 1fmw:A, 2jhr:A, 2jj9:A, 1jx2:A, 1lvk:A, 3mjx:A, 3mkd:A, 1mma:A, 1mmd:A, 1mmg:A, 1mmn:A, 1mne:A, 3mnq:A, 3myh:X, 3myk:X, 3myl:X, 4pjk:A, 1vom:A, 1w9i:A, 1w9j:A, 1w9k:A, 1w9l:A, 2x9h:A, 2xel:A, 2xo8:A, 2y8i:X, 1yv3:A, 6z2s:A, 6z7t:A, 6z7t:B, 6z7u:A
12 4qq3:A 302 48 0.0974 0.0497 0.3125 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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