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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPV
FGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTES
CPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAVARIREQVGDDKVILGLSGGVDSSV
TAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE
ALKLEDVKWLAQGTIYPDVIEMKMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRR
ADAIFIEELRKADLYDKVSQAFTVFLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNG
ISRVVYDISGKPPATIEWE

The query sequence (length=499) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1gpm:A 501 501 0.9980 0.9940 0.9940 0.0 1gpm:B, 1gpm:C, 1gpm:D
2 5tw7:F 490 501 0.6413 0.6531 0.6387 0.0 5tw7:E
3 2ywc:A 475 498 0.4729 0.4968 0.4739 9.48e-150 2ywc:B, 2ywc:C, 2ywc:D
4 4wio:A 525 536 0.4248 0.4038 0.3955 6.02e-140 3uow:A
5 3uow:B 477 500 0.4128 0.4319 0.4120 3.50e-137
6 6jp9:A 298 302 0.3206 0.5369 0.5298 8.02e-102 6jp9:B, 6jp9:C, 6jp9:D
7 2vxo:B 658 553 0.3808 0.2888 0.3436 2.05e-80 2vxo:A
8 2vxo:B 658 107 0.0661 0.0502 0.3084 3.37e-05 2vxo:A
9 7yc6:A 183 191 0.1182 0.3224 0.3089 1.73e-23
10 1i7q:B 192 191 0.0982 0.2552 0.2565 5.72e-08 1i7q:D
11 8hx8:A 673 167 0.0942 0.0698 0.2814 3.05e-07 8hx6:A, 8hx6:B, 8hx7:A, 8hx7:B, 8hx8:B, 8hx9:B
12 7d54:A 242 159 0.0862 0.1777 0.2704 8.07e-05 7d54:B
13 2e18:A 256 191 0.0942 0.1836 0.2461 5.99e-04 2e18:B
14 1xng:B 262 167 0.0721 0.1374 0.2156 0.001 1xng:A
15 1c3o:B 379 93 0.0601 0.0792 0.3226 0.003 1c3o:D, 1c3o:F, 1c3o:H, 1ce8:B, 1ce8:D, 1ce8:F
16 3huj:A 275 101 0.0541 0.0982 0.2673 0.012 4en3:C, 3huj:C, 4lhu:A, 4mng:A, 4mng:C, 4mq7:A, 2po6:A, 2po6:E, 3sdx:A, 3sdx:C, 8sgb:A, 8sgm:A, 8sos:A, 8sos:E, 3tzv:C, 3u0p:A, 3u0p:C, 6v7y:A, 6v7z:A, 6v7z:C, 6v80:A, 6v80:F, 3vwj:A, 3vwk:A, 4wo4:A, 4ww2:C, 4wwk:C, 1zt4:A
17 5mko:A 308 59 0.0321 0.0519 0.2712 0.013 5mko:B, 5mkp:A, 5mkq:A, 5mkq:B, 3vrh:A
18 3fij:A 224 167 0.0842 0.1875 0.2515 0.029 3fij:B, 3fij:C, 3fij:D, 3fij:E, 3fij:F, 3fij:G, 3fij:H
19 1vco:A 531 72 0.0501 0.0471 0.3472 0.030 1vcn:A
20 2nv2:J 196 161 0.0902 0.2296 0.2795 0.037 2nv2:B, 2nv2:D, 2nv2:F, 2nv2:H, 2nv2:L, 2nv2:N, 2nv2:P, 2nv2:R, 2nv2:T, 2nv2:V, 2nv2:X
21 2hma:A 364 34 0.0341 0.0467 0.5000 0.052
22 2det:A 365 34 0.0361 0.0493 0.5294 0.15 2der:A, 2der:B, 2deu:A, 2deu:B
23 7rkh:D 559 48 0.0341 0.0304 0.3542 0.15 7rkh:C, 7rkh:A, 7rkh:B, 7rl0:A, 7rl0:D, 7rl0:B, 7rl0:C, 7rl0:E, 7rl0:H, 7rl0:F, 7rl0:G, 7rl0:W, 7rl0:Z, 7rl0:X, 7rl0:Y, 7rl5:A, 7rl5:B, 7rl5:D, 7rl5:C, 7rl5:E, 7rl5:M, 7rl5:R, 7rl5:P, 7rl5:L, 7rl5:O, 7rl5:S, 7rl5:Q, 7rnl:B, 7rnl:C, 7rnl:D, 7rnl:A, 7rnl:H, 7rnl:K, 7rnl:N, 7rnl:E, 7rnl:I, 7rnl:L, 7rnl:O, 7rnl:F, 7rnl:J, 7rnl:M, 7rnl:P, 7rnl:G, 7rnr:A, 7rnr:B, 7rnr:F, 7rnr:E, 7rnr:Q, 7rnr:S, 7rnr:a, 7rnr:Y, 7rnr:I, 7rnr:J, 7rnr:N, 7rnr:M, 7rnr:R, 7rnr:T, 7rnr:b, 7rnr:Z, 7rnr:g, 7rnr:h, 7rnr:l, 7rnr:k
24 6scy:B 298 223 0.1042 0.1745 0.2332 0.29 6scy:A
25 5f23:A 263 68 0.0401 0.0760 0.2941 0.35
26 7dpt:A 556 147 0.0661 0.0594 0.2245 0.36 7dpt:B, 7dpt:C, 7dpt:D, 7dpw:A, 7dpw:B, 7dpw:C, 7dpw:D, 8i0h:A, 8i0i:A, 8i0i:C, 8i0i:D, 8i0i:E, 7wiz:A, 7wiz:B, 7wiz:C, 7wiz:D, 7wj4:D, 7wj4:A, 7wj4:B, 7wj4:C
27 8hx9:A 632 94 0.0561 0.0443 0.2979 0.39
28 6w2j:B 1364 190 0.0902 0.0330 0.2368 0.39
29 5n29:A 265 78 0.0461 0.0868 0.2949 0.39
30 5dou:D 1430 190 0.0902 0.0315 0.2368 0.41 5dou:A, 5dou:B, 5dou:C, 6w2j:A
31 6uel:A 1333 190 0.0902 0.0338 0.2368 0.42 6uel:B
32 5kha:A 526 50 0.0461 0.0437 0.4600 0.53 5kha:B
33 1jgt:B 500 79 0.0521 0.0520 0.3291 0.82 1jgt:A, 1mb9:A, 1mb9:B, 1mbz:A, 1mbz:B, 1mc1:A, 1mc1:B
34 3r75:B 622 96 0.0441 0.0354 0.2292 0.94 3r75:A, 3r76:A, 3r76:B
35 7p3t:B 299 158 0.0782 0.1304 0.2468 1.2 7p3t:A, 7p3t:C, 7p3t:D, 7p3t:E, 7p3t:F
36 7sk8:A 306 41 0.0281 0.0458 0.3415 1.4 7sk3:A, 7sk4:A, 7sk5:A, 7sk9:A
37 7oho:AAA 605 46 0.0341 0.0281 0.3696 1.5 6qh5:A, 8t1o:A, 4uqi:A, 2vgl:A
38 3fiu:A 238 164 0.0762 0.1597 0.2317 1.8 3fiu:B, 3fiu:C, 3fiu:D
39 7d50:B 255 27 0.0220 0.0431 0.4074 2.2 7d4r:A, 7d50:A, 7d53:A, 7d53:B, 7d53:C, 7d53:D
40 7d4r:B 215 26 0.0220 0.0512 0.4231 2.7
41 8fve:B 538 192 0.0902 0.0836 0.2344 2.7 2ad5:A, 2ad5:B, 8fv6:AAA, 8fv6:BBB, 8fv7:AAA, 8fv7:BBB, 8fv8:AAA, 8fv8:BBB, 8fv9:AAA, 8fv9:BBB, 8fva:AAA, 8fva:BBB, 8fvb:AAA, 8fvb:BBB, 8fvc:AAA, 8fvc:BBB, 8fvd:A, 8fvd:B, 8fve:A, 8i9o:A, 8i9o:B, 8i9o:D, 8i9o:C, 1s1m:A, 1s1m:B, 8sbr:A, 8sbr:B, 5tkv:A, 5tkv:B, 5u3c:A, 5u3c:B, 5u3c:C, 5u3c:D, 5u6r:A, 5u6r:B, 5u6r:C, 5u6r:D
42 3dc2:A 526 75 0.0481 0.0456 0.3200 3.1 3dc2:B, 3ddn:B
43 4qiw:B 1069 161 0.0862 0.0402 0.2671 3.2 4qiw:J
44 2vrn:A 185 57 0.0321 0.0865 0.2807 3.3
45 6kf3:B 1114 161 0.0862 0.0386 0.2671 3.6 9bct:B, 9bcu:B, 6kf4:B, 6kf9:B
46 4wgj:A 210 48 0.0301 0.0714 0.3125 4.0
47 7aor:ar 255 52 0.0401 0.0784 0.3846 4.7
48 4wh5:A 158 78 0.0421 0.1329 0.2692 4.8 4wh5:B
49 4xfj:B 397 36 0.0261 0.0327 0.3611 5.0 4xfj:A
50 3d1l:B 259 108 0.0481 0.0927 0.2222 5.1
51 8fhb:A 204 44 0.0240 0.0588 0.2727 6.1
52 6n8e:A 1332 127 0.0701 0.0263 0.2756 7.3
53 6cyy:A 330 31 0.0240 0.0364 0.3871 7.5 6cyj:A, 6cyj:B, 6cyy:B, 6cz6:A, 6cz6:B, 6cz6:C, 6cz6:D, 6d2s:A
54 7ybf:A 177 25 0.0220 0.0621 0.4400 9.5
55 5i0i:A 784 83 0.0501 0.0319 0.3012 9.8 5i0h:A, 5i0h:B, 5i0i:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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