Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ENDAYVHATPLIRRLAREFGVNLAKVKGTGRKGRILREDVQAYVKEAIKRAEAAP

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8oqj:B 55 55 1.0000 1.0000 1.0000 1.78e-34
2 1w85:J 34 38 0.3273 0.5294 0.4737 4.01e-06
3 1t7l:A 734 27 0.2182 0.0163 0.4444 0.068 3bq5:B, 3bq6:A, 3bq6:B, 1t7l:B, 1xdj:A, 1xdj:B, 1xpg:A, 1xpg:B, 1xr2:A, 1xr2:B
4 6rm8:A 655 38 0.2182 0.0183 0.3158 0.39 6fa5:A, 6faa:A, 6fac:A, 6rm9:A, 6rma:A, 6rmb:A, 6rmc:A, 6rmc:B, 6zm2:A
5 5lqw:Q 791 47 0.2545 0.0177 0.2979 0.44
6 7dco:1 930 47 0.2545 0.0151 0.2979 0.68 6g90:O, 5gm6:G, 5nrl:O, 5zwm:1, 5zwo:1
7 3pvc:A 635 29 0.2182 0.0189 0.4138 0.79 3sgl:A
8 7cza:A 419 25 0.2000 0.0263 0.4400 0.89 7cza:B
9 5t2h:A 296 28 0.2182 0.0405 0.4286 1.6
10 8gqn:A 390 26 0.2182 0.0308 0.4615 2.3 8gqn:B, 8gqn:C, 8gqn:D
11 3rku:A 268 38 0.2545 0.0522 0.3684 3.4 3rku:B, 3rku:C, 3rku:D
12 2eco:A 302 28 0.2545 0.0464 0.5000 4.9 2ecq:A, 2efy:A, 2efy:B, 1ve1:A
13 7vbq:B 271 26 0.1818 0.0369 0.3846 4.9
14 3nco:A 313 22 0.1818 0.0319 0.4545 5.0 3nco:B, 3rjy:A
15 3c7n:B 540 25 0.2000 0.0204 0.4400 6.1 5aqf:A, 5aqf:C, 5aqg:A, 5aqg:C, 5aqg:E, 5aqh:A, 5aqi:A, 5aqi:C, 5aqj:A, 5aqj:C, 5aqj:E, 5aqk:A, 5aqn:A, 5aqn:C, 5aqn:E, 5aqo:A, 5aqo:C, 5aqo:E, 5aqp:A, 5aqp:C, 5aqp:E, 5aqq:A, 5aqq:C, 5aqq:E, 5aqr:A, 5aqr:C, 5aqr:E, 5aqs:A, 5aqs:C, 5aqt:A, 5aqu:A, 5aqv:A, 1atr:A, 1ats:A, 6b1i:A, 6b1i:B, 6b1m:B, 6b1m:A, 6b1n:A, 6b1n:B, 1ba0:A, 1ba1:A, 1bup:A, 2bup:A, 4fl9:A, 5fpd:A, 5fpd:B, 5fpe:A, 5fpe:B, 5fpm:A, 5fpm:B, 5fpn:A, 5fpn:B, 3fzf:A, 3fzh:A, 3fzk:A, 3fzl:A, 3fzm:A, 4h5n:A, 4h5n:B, 4h5r:A, 4h5r:B, 4h5t:A, 4h5v:A, 4h5w:A, 4h5w:B, 6h54:A, 1hpm:A, 3hsc:A, 3i33:A, 1kax:A, 1kay:A, 1kaz:A, 3ldq:A, 3m3z:A, 1nga:A, 1ngb:A, 1ngc:A, 1ngd:A, 1nge:A, 1ngf:A, 1ngg:A, 1ngh:A, 1ngi:A, 1ngj:A, 7o6r:A, 7odb:A, 7odd:A, 7odi:A, 7plk:A, 1qqm:A, 1qqn:A, 1qqo:A, 2qwl:A, 2qwl:B, 2qwm:A, 2qwm:B, 2qwn:A, 2qwo:A, 2qwp:A, 2qwq:A, 2qwr:A, 2v7z:A, 2v7z:B, 6zyj:A, 6zyj:B
16 4aub:B 335 22 0.2000 0.0328 0.5000 6.2 4aub:A, 4aub:C, 4aub:G, 3n6q:D
17 4aub:F 298 22 0.2000 0.0369 0.5000 6.4 4aub:E, 4aub:H
18 4v6w:CG 241 23 0.2000 0.0456 0.4783 6.7 6xu6:CG, 6xu7:CG, 6xu8:CG
19 6kbh:A 765 16 0.1455 0.0105 0.5000 7.3
20 3zx2:B 399 29 0.1636 0.0226 0.3103 9.6 3zx0:A, 3zx0:B, 3zx0:C, 3zx0:D, 3zx2:A, 3zx2:C, 3zx2:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218