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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILE
DLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIF
MSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLAANELPSINDITCT
ELTEILSQLKNGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMV
KHLEVAEFLGGRLYDCVFKFNEV

The query sequence (length=343) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2q40:A 343 343 1.0000 1.0000 1.0000 0.0 1xfi:A
2 5hh9:A 390 113 0.0962 0.0846 0.2920 0.13 5hh9:B, 5i90:A, 5i90:B
3 3s1u:C 223 122 0.0816 0.1256 0.2295 1.3 3s1u:A, 3s1u:B, 3s1u:D, 3s1u:E, 3s1v:A, 3s1v:B, 3s1v:C, 3s1v:D, 3s1v:E, 3s1x:A, 3s1x:B, 3s1x:C, 3s1x:D, 3s1x:E, 4xz9:B, 4xz9:C, 6yr3:A, 6yr3:B, 6yr3:C, 6yr3:D, 6yr3:E, 6yrh:A, 6yrh:B, 6yrh:C, 6yrh:D, 6yrh:E, 6yrm:A, 6yrm:B, 6yrm:C, 6yrm:D, 6yrm:E, 6yrt:A, 6yrt:B, 6yrt:C, 6yrt:D, 6yrt:E, 6ys0:A, 6ys0:B, 6ys0:C, 6ys0:D, 6ys0:E
4 2eh6:A 375 92 0.0583 0.0533 0.2174 2.5 2eh6:B
5 8wa1:B 998 56 0.0525 0.0180 0.3214 2.6
6 8wa0:B 973 56 0.0525 0.0185 0.3214 2.8 8w9z:B
7 8vlx:A 2431 57 0.0466 0.0066 0.2807 2.9
8 6kbh:A 765 54 0.0496 0.0222 0.3148 3.5
9 1vrc:B 129 76 0.0641 0.1705 0.2895 3.9 1vrc:A
10 8rdj:C 1040 56 0.0496 0.0163 0.3036 5.6
11 7y1s:A 494 58 0.0525 0.0364 0.3103 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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