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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EMSLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVD
IAANTVIWDYKRDAPAHISTIGVCSMTDIAKKPTETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGLQPSVGPK
QASLNGVTLIGEAVKTQFNYYKKVDGVVQQLPETYFTQSRNLQEFKPRSQMEIDFLELAMDEFIERYKLEGYAFEHIVYG
DFSHSQLGGLHLLIGLAKRFKESPFELEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVVSKVV
KVTIDYTEISFMLWCKDGHVETFYPKL

The query sequence (length=347) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7n7r:B 348 346 0.9971 0.9943 1.0000 0.0 7k0r:A, 7k0r:B, 7k0r:C, 7k0r:D, 7k0r:E, 7k0r:F, 7k1l:A, 7k1l:B, 7k1o:A, 7k1o:B, 7k1o:C, 7n06:A, 7n06:B, 7n06:C, 7n06:D, 7n06:E, 7n06:F, 7n33:A, 7n33:B, 7n33:C, 7n33:D, 7n33:E, 7n33:F, 7n7u:A, 7n7u:B, 7n7w:B, 7n7y:A, 7n7y:B, 7n83:A, 7n83:B, 5s6x:A, 5s6x:B, 5s6y:A, 5s6y:B, 5s6z:A, 5s6z:B, 5s71:B, 5s72:A, 5sa4:B, 5sa5:B, 5sa6:A, 5sa6:B, 5sa7:A, 5sa8:A, 5sa8:B, 5sa9:B, 5saa:A, 5saa:B, 5sab:B, 5sac:B, 5sad:B, 5sae:A, 5sae:B, 5saf:A, 5saf:B, 5sag:B, 5sah:A, 5sah:B, 5sai:B, 7tj2:A, 7tj2:E, 7tqv:A, 7tqv:C, 7tqv:E, 8ud3:B, 8ud3:A, 8ud4:B, 8ud4:A, 8ud5:D, 8ud5:B, 8ud5:A, 6vww:A, 6wlc:A, 6wlc:B, 6wxc:A, 6wxc:B, 6x1b:A, 6x1b:B, 6x4i:A, 6x4i:B
2 8x1a:B 319 83 0.0720 0.0784 0.3012 3.0
3 4std:A 164 35 0.0346 0.0732 0.3429 3.1 1std:A, 2std:A, 3std:A, 3std:B, 3std:C, 4std:B, 4std:C, 5std:A, 5std:B, 5std:C, 6std:A, 6std:B, 6std:C, 7std:A, 7std:B, 7std:C
4 4jap:C 353 83 0.0720 0.0708 0.3012 6.0 4jao:C, 4jao:B, 4jap:B, 4jap:A, 4jaq:D, 4jaq:A, 4jaq:C, 4jaq:B, 4jd3:C, 4jd3:B
5 2e7w:A 150 83 0.0663 0.1533 0.2771 8.3 2e7x:A, 2efp:A, 2efq:A, 2pmh:A, 2pn6:A, 2yx4:A, 2yx7:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218