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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EMSCAEKLLKVLSFGLWNPTYSRSERQSFQELLTVLEPVYPLPNELGRVSARFSDGSSLRISVTNSESIEAEIRTPDNEK
ITVLLESNEQNRLLQSLPIDRHMPYIQVHRALSEMDLTDTTSMRNLLGFTSKLSTTLIPHNAQTDPLSGPTPFSSIFMDT
CRGLGNAKLSLNGVDIPANAQMLLRDALGLKDTHSSPSRNVIDHGISRHDAEQIARESSGSDNQKAEVVEFLCHPEAATA
ICSAFYQSFNVPALTLTHERISKASEYNACINISISQSSDGNIYVTSHTGVLIMAPEDRPNEMGMLTNRTSYEVPQGVKC
TIDEMVRALQPRYAASETYLQ

The query sequence (length=341) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3pcs:B 355 350 0.9707 0.9324 0.9457 0.0 4fma:A, 4fma:B, 4fma:C, 4fma:D, 4fma:E, 4fma:F, 4fma:H, 4fma:I, 4fma:J, 4fma:L, 4fmd:E, 3pcs:A, 3pcs:C, 3pcs:D
2 4fmb:A 351 257 0.1554 0.1510 0.2062 0.42 4fmb:C, 4fmb:E
3 5nuo:D 200 78 0.0587 0.1000 0.2564 0.57 8i8r:D, 5nuo:B, 5nuo:F, 5nup:E, 5nur:D
4 5x9d:A 302 106 0.0850 0.0960 0.2736 2.5 7f4c:A, 7f4c:B
5 6z1p:AB 264 125 0.0762 0.0985 0.2080 2.8
6 5hm3:A 625 77 0.0645 0.0352 0.2857 8.7 5ey9:A, 5ey9:B
7 6hzz:B 516 41 0.0381 0.0252 0.3171 9.7 6hzz:A, 6i01:A, 6i01:B, 6i02:A, 6i02:B
8 7phr:A 243 69 0.0440 0.0617 0.2174 9.8 4en3:A, 4mji:D, 4mji:I, 7t2b:D, 7t2b:I, 7t2b:N, 7t2b:S, 1ymm:D
9 7ac7:U 103 23 0.0323 0.1068 0.4783 9.9 8a3l:t, 7abz:U, 7acj:U, 7acr:U, 5ady:U, 5afi:U, 5aka:U, 8akn:t, 8am9:t, 8ana:t, 8ap4:t, 9ax7:t, 9ax8:U, 8aye:t, 8b0x:t, 7b5k:U, 8b7y:c, 3bbx:U, 8bf7:R, 8bge:R, 8bgh:R, 8bh4:R, 8bhj:R, 8bhl:R, 8bhn:R, 8bhp:R, 8bil:R, 8bim:R, 7bl2:U, 7bl3:U, 7bl4:U, 7bl5:U, 7bl6:U, 6bu8:23, 7bv8:V, 6by1:CU, 6by1:DU, 6c4i:V, 8c8x:U, 8c8y:U, 8c8z:U, 8c90:U, 8c91:U, 8c92:U, 8c93:U, 8c94:U, 8c95:U, 8c96:U, 8c97:U, 8c98:U, 8c99:U, 8c9a:U, 8c9b:U, 8c9c:U, 8cam:t, 8ceu:t, 8cgd:t, 8cgk:t, 8cgv:t, 9cg5:t, 9cg6:t, 9cg7:t, 9cl9:U, 7cpj:U, 4csu:U, 7d6z:U, 7d80:s, 6dnc:Y, 8eiu:t, 8ekc:W, 8emm:t, 6enf:U, 6enj:U, 6enu:U, 9fbv:t, 8fiz:DB, 8fto:t, 8fzd:W, 8fze:W, 8fzf:W, 8fzg:W, 8fzh:W, 8fzi:W, 8fzj:W, 8g2u:U, 8g31:U, 8g34:U, 8g38:U, 8g6w:t, 8g6x:t, 8g6y:t, 8g7p:W, 8g7q:W, 8g7r:W, 8g7s:W, 5gad:V, 5gae:V, 5gaf:V, 5gag:V, 5gah:V, 6gbz:U, 6gc0:U, 6gc4:U, 6gc6:U, 6gc7:U, 6gc8:U, 6gwt:U, 6gxm:U, 6gxn:U, 6gxo:U, 6gxp:U, 6h4n:U, 5h5u:V, 6h58:U, 6h58:UU, 6hrm:U, 8hsp:t, 8htz:t, 8hu1:t, 6i0y:h, 6i7v:DV, 6i7v:CV, 8ifb:t, 8ifc:t, 5iqr:U, 5it8:CV, 5it8:DV, 8j1z:t, 2j28:U, 3j45:U, 3j46:U, 3j5l:U, 5j5b:CV, 5j5b:DV, 3j7z:U, 5j7l:CV, 5j7l:DV, 3j8g:U, 5j88:CV, 5j88:DV, 5j8a:CV, 5j8a:DV, 3j9y:U, 3j9z:LS, 5j91:CV, 5j91:DV, 3ja1:LW, 3jbu:u, 3jbv:u, 3jcd:U, 3jce:U, 3jcj:T, 3jcn:U, 5jc9:CV, 5jc9:DV, 7jss:u, 7jsw:u, 7jsz:u, 5jte:BU, 7jt1:u, 7jt2:u, 7jt3:u, 5ju8:BU, 7k00:t, 7k50:u, 7k51:u, 7k52:u, 7k53:u, 7k54:u, 7k55:u, 5kcr:1Y, 5kcs:1Y, 5kps:U, 5kpv:T, 5kpw:T, 5kpx:T, 5l3p:Y, 6lkq:c, 7lv0:u, 7lvk:c, 5lza:U, 5lzb:U, 5lzc:U, 5lzd:U, 5lze:U, 5lzf:U, 7m5d:U, 5mdv:U, 5mdw:U, 5mdy:U, 5mdz:U, 5mgp:U, 7n1p:LX, 7n2c:LX, 7n2u:LX, 7n2v:LX, 7n30:LX, 7n31:LX, 7nbu:t, 5nco:V, 5np6:s, 7nso:U, 7nsp:U, 7nsq:U, 5nwy:h, 7nwt:U, 7nww:T, 7o19:BU, 7o1a:BU, 7o1c:BU, 5o2r:U, 6o9j:U, 6o9k:U, 7ode:c, 6ofx:u, 6og7:u, 6ogf:u, 6ogg:u, 6ogi:u, 7oif:T, 7oig:T, 7oii:T, 7oiz:t, 7oj0:t, 6om6:U, 6ore:U, 6orl:U, 6osk:U, 6osq:U, 6ost:U, 6ot3:U, 7ot5:T, 7otc:U, 6ouo:U, 8p16:U, 8p17:U, 8p18:U, 7p3k:t, 8peg:x, 8phj:t, 6pj6:c, 7pjs:U, 7pjt:U, 7pju:U, 7pjv:U, 7pjw:U, 7pjx:U, 7pjy:U, 7pjz:U, 8pkl:x, 8pva:t, 7q4k:BU, 8q4f:t, 6q97:U, 6q98:U, 6q9a:U, 8qbt:U, 6qdw:u, 7qg8:h, 7qgh:h, 7qgn:h, 7qgr:h, 8qk7:U, 8qoa:t, 7qq3:c, 6qul:V, 8r6c:t, 8r8m:t, 8rpy:U, 8rpz:U, 8rq0:U, 8rq2:U, 6s0k:V, 7s1g:c, 7s1h:c, 7s1i:c, 7s1j:c, 7s1k:c, 7sa4:U, 7ss9:u, 7ssd:u, 7ssl:u, 7ssn:u, 7sso:u, 7ssw:u, 7st2:u, 7st6:u, 7st7:u, 8syl:W, 6szs:U, 8t5d:U, 8t5h:U, 6tbv:L241, 6tc3:L241, 7tos:L24, 4u1u:BU, 4u1u:DU, 4u1v:BU, 4u1v:DU, 4u20:BU, 4u20:DU, 4u24:BU, 4u24:DU, 4u25:BU, 4u25:DU, 4u26:BU, 4u26:DU, 4u27:BU, 4u27:DU, 5u4i:V, 6u48:CV, 5u9f:23, 5u9g:23, 7ug7:LX, 7uph:t, 8upo:3, 8upr:3, 8uql:3, 8uqm:3, 8uqp:3, 8ur0:3, 8urh:3, 8uri:3, 8urx:3, 8ury:3, 4uy8:U, 5uyk:23, 5uyl:23, 5uym:23, 5uyn:23, 5uyp:23, 5uyq:23, 4v4h:BU, 4v4h:DU, 4v4q:BU, 4v4q:DU, 4v4v:BS, 4v4w:BS, 4v50:BU, 4v50:DU, 4v52:BU, 4v52:DU, 4v53:BU, 4v53:DU, 4v54:BU, 4v54:DU, 4v55:BU, 4v55:DU, 4v56:BU, 4v56:DU, 4v57:BU, 4v57:DU, 4v5b:AU, 4v5b:CU, 4v5h:BU, 4v5y:BU, 4v5y:DU, 4v64:BU, 4v64:DU, 4v65:BO, 4v66:BO, 4v69:BU, 4v6c:BU, 4v6c:DU, 4v6d:BU, 4v6d:DU, 4v6e:BU, 4v6e:DU, 4v6k:AV, 4v6l:BV, 4v6m:BU, 4v6n:AW, 4v6o:BW, 4v6p:BW, 4v6q:BW, 4v6r:BW, 4v6s:AW, 4v6t:BU, 4v6v:BY, 4v6y:BU, 4v6z:BU, 4v70:BU, 4v71:BU, 4v72:BU, 4v73:BU, 4v74:BU, 4v75:BU, 4v76:BU, 4v77:BU, 4v78:BU, 4v79:BU, 4v7a:BU, 4v7b:BU, 4v7c:BW, 4v7d:AX, 4v7i:AU, 4v7s:BU, 4v7s:DU, 4v7t:BU, 4v7t:DU, 4v7u:BU, 4v7u:DU, 4v7v:BU, 4v7v:DU, 4v85:BY, 4v89:BY, 4v9c:BU, 4v9c:DU, 4v9d:CU, 4v9d:DU, 4v9o:AU, 4v9o:CU, 4v9o:EU, 4v9o:GU, 4v9p:AU, 4v9p:CU, 4v9p:EU, 4v9p:GU, 8vs9:L24, 8vsa:L24, 6vu3:3, 6vwl:S, 6vwm:S, 6vwn:S, 6vyq:3, 6vyr:3, 6vys:3, 6vyt:3, 6vyu:3, 6vyw:3, 6vyx:3, 6vyy:3, 6vyz:3, 6vz2:3, 6vz3:3, 6vz5:3, 6vz7:3, 6vzj:3, 8w51:V, 5wdt:U, 6wd0:u, 6wd1:u, 6wd2:u, 6wd3:u, 6wd4:u, 6wd5:u, 6wd6:u, 6wd7:u, 6wd8:u, 6wd9:u, 6wda:u, 6wdb:u, 6wdc:u, 6wdd:u, 6wde:u, 6wdf:u, 6wdg:u, 6wdh:u, 6wdi:u, 6wdj:u, 6wdk:u, 6wdl:u, 6wdm:u, 5we4:U, 5we6:U, 4wf1:BU, 4wf1:DU, 5wf0:U, 5wfk:U, 5wfs:U, 6wnt:u, 6wnv:u, 6wnw:u, 4woi:BU, 4woi:CU, 4www:RU, 4www:YU, 6x6t:3, 6x7f:3, 6x7k:3, 6x9q:3, 6xdq:3, 6xdr:3, 6xgf:3, 6xii:3, 6xij:3, 6xz7:U, 6xza:U2, 6xzb:U2, 6y69:U, 7y7c:t, 7y7d:t, 7y7e:t, 7y7f:t, 7y7g:t, 7y7h:t, 4ybb:CV, 4ybb:DV, 7yla:c, 6ys3:u, 6ysr:U, 6yss:U, 6yst:U, 6ysu:U, 7z20:u, 7zod:u, 7zp8:u, 6ztj:BV, 6ztl:BV, 6ztm:BV, 6ztn:BV, 6zto:BV, 6ztp:BV, 7zta:L241, 6zu1:BV

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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