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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EMRIGHGFDVHAFGPIIIGGVRIPYHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKG
YTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK

The query sequence (length=148) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3esj:A 162 157 1.0000 0.9136 0.9427 2.28e-102 2amt:A, 2amt:B, 2amt:C, 2amt:D, 2amt:F, 2amt:E, 3elc:A, 3elc:B, 3elc:C, 3eor:A, 3ern:A, 3ern:B, 3ern:C, 3ern:D, 3ern:E, 3ern:F, 3fba:A, 3ghz:A, 3ghz:B, 3ghz:C, 1gx1:A, 1gx1:C, 1gx1:B, 2gzl:A, 1h47:A, 1h47:B, 1h47:C, 1h47:D, 1h47:E, 1h47:F, 1h48:A, 1h48:F, 1h48:C, 1h48:B, 1h48:D, 1h48:E, 1jy8:A, 1knj:A, 1knk:A, 3t80:A, 3t80:B, 3t80:C, 3t80:D, 3t80:E, 3t80:F, 1u3l:A, 1u3p:A, 1u40:A, 1u43:A, 1yqn:A
2 3fpi:A 161 158 0.8716 0.8012 0.8165 8.42e-89
3 1jn1:A 157 156 0.7973 0.7516 0.7564 1.55e-79 1jn1:B, 1jn1:C, 1vh8:A, 1vh8:B, 1vh8:C, 1vh8:D, 1vh8:E, 1vh8:F, 1vha:A, 1vha:B, 1vha:C, 1vha:D, 1vha:E, 1vha:F
4 5b8f:C 164 155 0.7297 0.6585 0.6968 7.31e-68 5b8f:A, 5b8f:B
5 1t0a:A 158 157 0.6959 0.6519 0.6561 1.91e-66 1t0a:B, 1t0a:C
6 4c8e:A 161 157 0.6554 0.6025 0.6178 1.19e-60 4c8e:C, 4c8e:B, 4c8g:A, 4c8g:C, 4c8g:B, 4c8i:A, 4c8i:B, 4c8i:C, 3f0d:B, 3k2x:A, 3mbm:B
7 3iew:A 160 157 0.6419 0.5938 0.6051 3.47e-59 3f0d:A, 3f0d:C, 3f0d:D, 3f0d:E, 3f0d:F, 3f0e:A, 3f0e:B, 3f0e:C, 3f0f:A, 3f0f:B, 3f0f:C, 3f0g:A, 3f0g:B, 3f0g:C, 3f0g:D, 3f0g:E, 3f0g:F, 3ieq:A, 3ieq:C, 3ieq:B, 3iew:C, 3iew:B, 3ike:A, 3ike:B, 3ike:C, 3ikf:A, 3ikf:B, 3ikf:C, 3jvh:A, 3jvh:B, 3jvh:C, 3k14:A, 3k14:B, 3k14:C, 3k2x:C, 3k2x:B, 3ke1:A, 3ke1:B, 3ke1:C, 5l03:A, 5l03:B, 5l03:C, 5l12:A, 5l12:B, 5l12:C, 3mbm:A, 3mbm:C, 6mwf:A, 6mwf:B, 6mwf:C, 6mwi:A, 6mwi:B, 6mwi:C, 6mwj:A, 6mwj:B, 6mwj:C, 6mwk:A, 6mwk:B, 6mwk:C, 6nmo:A, 6nmo:B, 6nmo:C, 3p0z:A, 3p0z:C, 3p0z:B, 3p10:A, 3p10:C, 3p10:B, 3q8h:A, 3q8h:B, 3q8h:C, 3qhd:A, 3qhd:C, 3qhd:B, 6v3m:A, 6v3m:B, 6v3m:C
8 5iwx:A 158 156 0.6351 0.5949 0.6026 6.45e-58 5iwx:B, 5iwx:C, 5iwx:D, 5iwx:E, 5iwx:F, 5iwy:A, 5iwy:C, 5iwy:B, 5iwy:D, 5iwy:E, 5iwy:F
9 5esv:G 187 194 0.6689 0.5294 0.5103 7.47e-51 5esv:E, 5esv:F
10 3re3:B 144 152 0.5473 0.5625 0.5329 4.62e-47
11 1w55:A 369 149 0.5068 0.2033 0.5034 5.32e-43 1w57:A
12 2pmp:A 160 156 0.4932 0.4562 0.4679 4.84e-41
13 8xkf:C 377 148 0.4257 0.1671 0.4257 3.81e-33 8xhu:A, 8xhu:B, 8xhu:C, 8xkf:A, 8xkf:B, 8xkf:D, 8xkf:F, 8xkf:E
14 1iv2:A 150 136 0.3716 0.3667 0.4044 4.73e-25 1iv2:C, 1iv2:B, 1iv2:D, 1iv2:F, 1iv2:E, 1iv3:A, 1iv3:B, 1iv3:C, 1iv3:D, 1iv3:E, 1iv3:F, 1iv4:A, 1iv4:B, 1iv4:C, 1iv4:D, 1iv4:E, 1iv4:F
15 4c81:A 156 157 0.3851 0.3654 0.3631 5.47e-25 4c82:A
16 2uzh:C 155 113 0.3311 0.3161 0.4336 8.76e-25 2uzh:A, 2uzh:B
17 3b6n:A 150 162 0.3716 0.3667 0.3395 3.35e-21
18 8tz1:A 533 86 0.1824 0.0507 0.3140 0.27 8tz1:C, 8tz1:B, 8tz2:A, 8tz2:C, 8tz2:B, 8tz3:A, 8tz3:C, 8tz3:B, 8tz4:A, 8tz5:A, 8tz5:B, 8tz5:C, 8tz6:A, 8tz6:B, 8tz6:C, 8tz7:A, 8tz7:B, 8tz7:C, 8tz8:A, 8tz8:B, 8tz8:C, 8tz9:B, 8tz9:A, 8tz9:C, 8tza:B, 8tza:A, 8tza:C, 8tzd:A, 8tzd:B, 8tzd:C
19 3l1p:A 147 84 0.1554 0.1565 0.2738 0.37 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
20 8oup:B 151 39 0.0946 0.0927 0.3590 2.2 8oup:A, 8oup:C, 8oup:D
21 1nx4:C 250 36 0.0743 0.0440 0.3056 2.7 1nx4:A, 1nx8:A, 1nx8:C
22 1yht:A 344 63 0.1216 0.0523 0.2857 2.7
23 3n0t:A 452 45 0.1014 0.0332 0.3333 2.8 4ebb:A, 3n0t:B, 3n0t:C, 3n0t:D
24 4oj8:B 271 36 0.0743 0.0406 0.3056 3.2 1nx4:B, 1nx8:B, 4oj8:A, 4oj8:C
25 7q41:A 369 72 0.1419 0.0569 0.2917 3.3 7q41:C, 7q41:E, 7q42:C, 7q42:A, 7q42:E, 7q43:A, 7q43:C, 7q43:E, 7q44:C, 7q44:A, 7q44:E, 7q45:A, 7q45:C, 7q45:E, 7q46:C, 7q46:E, 7q46:A
26 7anv:A 467 37 0.1284 0.0407 0.5135 3.5
27 6d5f:A 194 82 0.1554 0.1186 0.2805 3.8 6d5f:B, 6d5f:C, 6d5f:D, 6d5f:E, 6d5f:F, 6d5f:G, 6d5f:H, 6d5f:I, 6d5f:J, 6d5f:K, 6d5f:L, 6d5f:M, 6d5f:N, 6d5f:O, 6d5f:P, 6d5f:Q, 6d5f:R, 6d5f:S, 6d5f:T, 6d5f:U, 6d5f:V, 6d5f:W, 6d5f:X, 6d5f:Y, 6d5f:Z
28 3hhs:B 656 56 0.1081 0.0244 0.2857 4.4
29 6kwy:c 1811 32 0.0743 0.0061 0.3438 7.7 8cvs:c, 6kwx:A, 7naq:c
30 6asy:A 606 99 0.1824 0.0446 0.2727 8.0 7a4v:A, 6asy:B, 6cz1:A, 6cz1:B, 6dfm:A, 6dfm:B, 6dfo:A, 6dfo:B, 6do2:A, 6do2:B, 6dws:A, 6dws:B, 5e84:A, 5e84:B, 5e84:C, 5e84:D, 5e84:E, 5e84:F, 6eoe:A, 6eof:A, 5evz:A, 5evz:B, 5ex5:A, 5ex5:B, 5exw:A, 5exw:B, 5ey4:A, 5ey4:B, 5f0x:A, 5f0x:B, 5f1x:A, 5f1x:B, 5f2r:A, 5f2r:B, 3iuc:A, 3iuc:C, 3ldl:A, 3ldl:B, 3ldo:A, 3ldo:B, 3ldp:A, 3ldp:B, 7n1r:A, 7n1r:B, 6zmd:A, 6zyh:A, 6zyh:B
31 3v4l:A 386 44 0.0946 0.0363 0.3182 9.0 7a41:B, 6f7i:B, 6h4a:A, 4i1p:A, 4i1p:C, 7pav:B, 7paw:B, 3uo8:B, 3uo8:C, 3uoa:B, 3uoa:C, 3v4o:A, 8v4x:A, 8v4x:B, 8v4x:C, 8v4x:D, 8v4x:E, 8v4x:F, 6yn8:A, 6yn9:A
32 2lvj:A 77 38 0.0811 0.1558 0.3158 9.3 1k9u:A, 1k9u:B, 2lvk:A, 5otj:D, 5otj:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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