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BioLiP
>protein
EMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQI
AYSKSDSDIV

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6f4h:C 96 90 1.0000 0.9375 1.0000 2.52e-62 6f4g:B, 6f4g:E, 6f4h:A, 6f4h:E
2 4pkd:B 240 87 0.7889 0.2958 0.8161 1.41e-49 1aud:A, 7b0y:c, 3bo2:A, 3bo3:A, 3bo4:A, 4c4w:A, 4c4w:E, 3cul:A, 3cul:B, 3cun:A, 3cun:B, 7d7v:C, 5ddo:G, 5ddo:C, 5ddp:D, 5ddp:C, 5ddq:D, 5ddq:C, 5ddr:D, 5ddr:C, 7dlz:A, 7dlz:B, 1drz:A, 7dwh:A, 7dwh:B, 1dz5:A, 1dz5:B, 3egz:A, 5fj4:A, 5fj4:E, 3g8s:A, 3g8s:B, 3g8s:C, 3g8s:D, 3g8t:A, 3g8t:B, 3g8t:C, 3g8t:D, 3g96:A, 3g96:B, 3g96:C, 3g96:D, 3g9c:A, 3g9c:B, 3g9c:C, 3g9c:D, 8gxb:C, 8gxb:D, 8gxb:F, 8gxc:C, 8gxc:D, 8gxc:F, 3hhn:B, 3hhn:D, 3iin:A, 3irw:P, 3iwn:C, 3iwn:D, 8jy0:A, 8jy0:C, 8jy0:E, 3k0j:A, 3k0j:B, 3l3c:A, 3l3c:B, 3l3c:C, 3l3c:D, 6las:E, 6las:D, 6las:C, 6lau:E, 6lau:D, 6lau:C, 6lax:D, 6lax:E, 6lax:C, 6laz:D, 6laz:E, 6laz:C, 1m5k:C, 1m5k:F, 1m5o:C, 1m5o:F, 1m5p:C, 1m5p:F, 1m5v:C, 1m5v:F, 3mum:P, 3mur:P, 3mut:P, 3muv:P, 3mxh:P, 2nz4:A, 2nz4:B, 2nz4:C, 2nz4:D, 2oih:A, 2oj3:A, 3p49:B, 4pr6:A, 4prf:A, 7qr3:A, 7qr3:B, 7qr4:A, 6qx9:1A, 3r1h:A, 3r1h:D, 3r1l:A, 3r1l:D, 1sj3:P, 1sj4:P, 1sjf:A, 6sqn:A, 6sqn:B, 6sqn:C, 6sqq:AAA, 6sqq:BBB, 6sqq:CCC, 1u6b:A, 3ucu:P, 3ucz:P, 3ud3:P, 3ud4:P, 1urn:A, 1urn:B, 1urn:C, 1vbx:A, 1vby:A, 1vbz:A, 1vc0:A, 1vc5:A, 1vc6:A, 7vpx:M, 4w90:B, 4w92:B, 1zzn:A
3 7abg:B 169 87 0.7444 0.3964 0.7701 9.23e-49 7a5p:X, 1a9n:B, 1a9n:D, 7abi:B, 6ah0:p, 6ahd:p, 8c6j:Y, 8ch6:s, 7evo:G, 9fmd:p, 8h6e:2C, 8h6j:2C, 8h6k:2C, 8h6l:2C, 8hk1:G, 8i0p:p, 8i0r:p, 8i0s:p, 8i0t:p, 8i0u:p, 8i0v:p, 8i0w:p, 6icz:p, 6id0:p, 6id1:p, 5mqf:X, 6qdv:Y, 8qo9:2B, 6qx9:2B, 8qxd:2B, 8qzs:2B, 8r08:2B, 8r09:2B, 8r0a:2B, 8r0b:2B, 8rm5:2B, 7vpx:G, 7w59:p, 7w5a:p, 7w5b:p, 5xjc:p, 6y53:b, 6y5q:b, 5yzg:p, 5z56:p, 5z57:p, 5z58:p
4 7abg:B 169 83 0.2667 0.1420 0.2892 0.098 7a5p:X, 1a9n:B, 1a9n:D, 7abi:B, 6ah0:p, 6ahd:p, 8c6j:Y, 8ch6:s, 7evo:G, 9fmd:p, 8h6e:2C, 8h6j:2C, 8h6k:2C, 8h6l:2C, 8hk1:G, 8i0p:p, 8i0r:p, 8i0s:p, 8i0t:p, 8i0u:p, 8i0v:p, 8i0w:p, 6icz:p, 6id0:p, 6id1:p, 5mqf:X, 6qdv:Y, 8qo9:2B, 6qx9:2B, 8qxd:2B, 8qzs:2B, 8r08:2B, 8r09:2B, 8r0a:2B, 8r0b:2B, 8rm5:2B, 7vpx:G, 7w59:p, 7w5a:p, 7w5b:p, 5xjc:p, 6y53:b, 6y5q:b, 5yzg:p, 5z56:p, 5z57:p, 5z58:p
5 6xh2:A 93 89 0.7222 0.6989 0.7303 6.12e-45 6cmn:A, 3k0j:D, 3k0j:C, 6xh0:A, 6xh1:A, 6xh3:A
6 8ro1:p 76 75 0.5222 0.6184 0.6267 8.43e-35
7 3jb9:k 89 84 0.4556 0.4607 0.4881 1.03e-25
8 7b9v:Y 88 84 0.3444 0.3523 0.3690 1.30e-15 6bk8:r, 7dco:p, 6exn:Y, 6g90:Y, 5gmk:a, 6j6g:a, 6j6h:a, 6j6n:a, 6j6q:a, 5lj3:Y, 5lj5:Y, 5mq0:Y, 5nrl:Y, 7oqb:Y, 7oqe:Y, 5wsg:X, 5y88:p, 5ylz:p, 5zwm:p, 5zwo:p
9 3lqv:B 115 82 0.3000 0.2348 0.3293 3.90e-09 2f9j:B, 3lqv:A, 7q4o:F, 8qo9:B6, 8qxd:B6, 8qzs:B6, 8r08:B6, 8r09:B6, 8r0a:B6, 8r0b:B6, 8rm5:B6
10 2mb0:B 95 76 0.2778 0.2632 0.3289 1.81e-06
11 2fy1:A 108 82 0.2889 0.2407 0.3171 1.85e-06
12 7q33:A 93 84 0.2444 0.2366 0.2619 1.93e-05 6pai:D, 6q0r:D, 6q0v:D, 6q0w:D, 6sj7:C, 6ud7:C, 6ue5:C
13 7qde:B 169 82 0.2667 0.1420 0.2927 8.88e-05 7qdd:B
14 2x1f:A 94 89 0.2222 0.2128 0.2247 1.38e-04 2km8:B, 2x1a:A
15 8i0v:4 161 80 0.2667 0.1491 0.3000 3.08e-04
16 6r5k:H 394 66 0.2778 0.0635 0.3788 4.04e-04 6r5k:D, 6r5k:F
17 4f02:A 175 80 0.2889 0.1486 0.3250 7.48e-04 1cvj:A, 1cvj:B, 1cvj:C, 1cvj:D, 1cvj:E, 1cvj:F, 1cvj:G, 1cvj:H, 4f02:D
18 4f02:A 175 83 0.2778 0.1429 0.3012 0.001 1cvj:A, 1cvj:B, 1cvj:C, 1cvj:D, 1cvj:E, 1cvj:F, 1cvj:G, 1cvj:H, 4f02:D
19 8xxm:3G 84 83 0.2556 0.2738 0.2771 0.001 5k0y:O, 8pj1:o, 8pj2:o, 8pj3:o, 8pj4:o, 8pj5:o, 8pj6:o
20 7s7b:C 79 80 0.2778 0.3165 0.3125 0.001 7s7b:G, 7s7c:C
21 2leb:A 101 67 0.1889 0.1683 0.2537 0.004 2lec:A
22 7csz:A 175 93 0.3222 0.1657 0.3118 0.008
23 2mgz:B 105 46 0.2000 0.1714 0.3913 0.009 4ch1:A, 4cio:A, 2ru3:A
24 2n7c:A 89 73 0.1889 0.1910 0.2329 0.015
25 6g90:B 193 68 0.2556 0.1192 0.3382 0.022
26 6n7p:A 186 68 0.2556 0.1237 0.3382 0.031 6n7r:A, 6n7x:A, 7oqc:B, 7oqe:B, 8w2o:A, 5zwn:Q
27 4lmz:A 176 67 0.2111 0.1080 0.2836 0.035 3nmr:A, 3nna:A, 3nnc:A, 3nnh:A, 3nnh:C, 3nnh:B, 3nnh:D
28 7dco:4 174 78 0.2556 0.1322 0.2949 0.037 6g90:R, 5gm6:e, 5nrl:R, 7oqb:R, 7oqe:R, 5zwm:4
29 7dco:4 174 69 0.2222 0.1149 0.2899 1.5 6g90:R, 5gm6:e, 5nrl:R, 7oqb:R, 7oqe:R, 5zwm:4
30 8ro0:O 342 49 0.2000 0.0526 0.3673 0.055 8ro1:O
31 8y6o:W 167 71 0.2222 0.1198 0.2817 0.058
32 8pv1:CI 152 68 0.2444 0.1447 0.3235 0.089 8i9p:CI, 8i9r:CI, 8i9t:CI, 8i9v:CI, 8i9w:CI, 8i9x:CI, 8i9y:CI, 8i9z:CI, 8ia0:CI, 8pv3:CI, 8pv4:CI, 8pv7:CI, 8pvk:CI
33 2n82:B 104 64 0.1778 0.1538 0.2500 0.12 2err:A, 7vrl:B
34 8xxn:3B 536 53 0.1778 0.0299 0.3019 0.24 6zon:B, 6zp4:B, 6zvj:B
35 4qqb:A 169 83 0.2222 0.1183 0.2410 0.28 1b7f:A, 1b7f:B, 4qqb:B
36 8pj1:1 588 53 0.1778 0.0272 0.3019 0.32 6fec:w, 2krb:A, 8oz0:I, 8pj2:1, 8pj3:1, 8pj5:1, 8pj6:1
37 8h6e:4R 106 76 0.2111 0.1792 0.2500 0.35 8h6j:4R, 8qp8:R, 8qp9:R, 8qpk:R, 6qw6:R, 6qx9:R, 8qxd:R, 8r08:R, 8r0a:R
38 4a8x:A 88 67 0.1889 0.1932 0.2537 0.57
39 8esq:o 137 61 0.2000 0.1314 0.2951 0.99 8esr:o, 8etg:o, 8eth:o, 8eti:o, 8eup:o, 8euy:o, 8ev3:o
40 6dg0:B 84 81 0.2000 0.2143 0.2222 1.3 6dg0:A
41 7dvq:Y 140 58 0.1556 0.1000 0.2414 1.6 8i0p:Y, 8i0r:Y
42 4uer:b 572 53 0.1889 0.0297 0.3208 1.7
43 6gsn:p 658 53 0.1889 0.0258 0.3208 2.4 8cah:p, 8cas:p, 6fyx:p, 6fyy:p, 6gsm:p, 6zce:p, 6zu9:p
44 3d34:B 215 29 0.1111 0.0465 0.3448 2.8 3d34:A
45 2adb:A 127 61 0.2111 0.1496 0.3115 2.9 3zzy:A, 3zzy:B, 3zzz:A, 3zzz:B
46 2yka:A 124 76 0.2000 0.1452 0.2368 3.9
47 6zwm:B 2185 52 0.1889 0.0078 0.3269 4.5 6zwm:A
48 8rch:A 2036 52 0.1889 0.0083 0.3269 4.6 8rch:B, 8rck:B, 8rcn:B
49 3jap:p 634 46 0.1556 0.0221 0.3043 7.8 6fyx:q, 6fyy:q
50 8edg:A 550 39 0.1667 0.0273 0.3846 8.2 6dww:A, 6dwy:A, 6dwz:A, 6dwz:E, 6dx0:A, 8eb5:A, 8edg:C, 8edg:I, 8edg:E, 8edg:G, 8edg:K, 8sjd:C, 8sjd:D, 8sjd:B, 8sjd:A
51 6gsn:q 675 46 0.1556 0.0207 0.3043 8.4 8cah:q, 8cas:q, 6gsm:q, 8s8e:p, 4uer:c, 6zce:q, 6zu9:q
52 3cei:A 213 29 0.1333 0.0563 0.4138 9.0 3cei:B
53 8g66:E 303 55 0.1778 0.0528 0.2909 9.2
54 6bcu:A 2204 52 0.1889 0.0077 0.3269 9.7 6bcu:B, 6bcx:A, 6bcx:B, 4drh:B, 4drh:E, 4dri:B, 4drj:B, 8er6:B, 8er6:D, 8er6:F, 8er7:B, 8er7:D, 8er7:F, 8era:A, 9f44:A, 9f44:B, 9f45:A, 9f45:B, 1fap:B, 2fap:B, 3fap:B, 4fap:B, 5flc:B, 5flc:F, 5gpg:B, 4jsp:B, 4jsp:A, 4jsv:B, 4jsv:A, 4jsx:B, 4jsx:A, 4jt5:B, 4jt5:A, 4jt6:B, 4jt6:A, 6m4u:B, 6m4u:F, 6m4w:G, 6m4w:H, 6m4w:I, 1nsg:B, 7pe7:B, 7pe7:A, 7pe8:A, 7pe9:A, 7pea:B, 7pea:A, 7peb:A, 7pec:A, 8ppz:B, 7uxc:A, 7uxh:A, 7uxh:C, 5wbh:C, 5wbh:D, 5wbu:B, 5wbu:A, 6zwo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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