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BioLiP
>protein
EMGAWKPLGISARRRAMLRKEVLTNGEDWPYDPERKAMRTKRKGHKCDRISAEKRENTAKLMLKMPQMLLDYKKRRWEKK
MKEEEKA

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6xyw:AK 87 87 1.0000 1.0000 1.0000 1.20e-58
2 3uji:L 208 44 0.1724 0.0721 0.3409 0.28
3 8a22:AJ 122 68 0.2299 0.1639 0.2941 1.1 8apn:AJ, 8apo:AJ
4 7l08:q 168 37 0.1379 0.0714 0.3243 1.4 7a5f:q3, 7a5g:q3, 7a5i:q3, 7a5j:q, 7a5k:q3, 8any:q, 6i9r:q, 8k2a:L8, 8k2b:L8, 7l20:q, 6nu2:q, 6nu3:q, 7o9k:q, 7o9m:q, 7odr:q, 7ods:q, 7odt:q, 7of0:q, 7of2:q, 7of3:q, 7of4:q, 7of5:q, 7of6:q, 7of7:q, 7og4:q, 7oi8:q, 7oia:q, 7oic:q, 7oid:q, 8oir:Bg, 8oit:Bg, 8pk0:q, 7po4:q, 7qh6:q, 7qh7:q, 7qi4:q, 7qi5:q, 7qi6:q, 8qsj:q, 6vlz:q, 6vmi:q, 8xt0:L8, 8xt1:L8, 8xt2:L8, 8xt3:L8, 6zm5:q, 6zm6:q, 6zs9:q, 6zsa:q, 6zsb:q, 6zsc:q, 6zsd:q, 6zse:q, 6zsg:q
5 1bbo:A 57 37 0.1379 0.2105 0.3243 1.7 3znf:A, 4znf:A
6 6ywe:b 161 42 0.1954 0.1056 0.4048 1.8 6yws:b, 6ywv:b, 6ywx:b, 6ywy:b
7 6y41:F 220 33 0.1379 0.0545 0.3636 5.2 6y41:A, 6y41:B, 6y41:C, 6y41:D, 6y41:E, 6y41:G, 6y41:H, 6y41:I, 6y41:J, 6y41:K, 6y41:L, 6y41:M, 6y41:N, 6y41:O, 6y41:P
8 7mop:A 2445 31 0.1034 0.0037 0.2903 9.2 6fyh:A, 6pfl:A, 6pfl:B, 8r7o:A, 8r7o:C, 8rd0:C, 8rd0:D, 8rd1:A, 8rd1:C, 8rd1:D, 8rd7:D, 6xz1:A
9 7pkt:J 114 78 0.2299 0.1754 0.2564 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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