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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EMCEIPEMDSHLVEKLGQHLLPWMDRLSLEHLNPSIYVGLRLSSLQAGTKEDLYLHSLKLGYQQCLLGCQGKPSMGQLAL
YLLALRANCEFVRGHKGDRLVSQLKWFLEDEKRAIGHDHKGHPHTSYYQYGLGILALCLHQKRVHDSVVDKLLYAVEPFH
QGHHSVDTAAMAGLAFTCLKRSNFNPGRRQRITMAIRTVQEEILKAQTPEGHFGNVYSTPLALQFLMTSPMRGAELGTAC
LKARVALLASLQDGAFQNALMISQLLPVLNHKTYIDLIFPDCLAPRVMLEPAAEQEIISVTLQVLSLLPPYRQSISVLAG
STVEDVLKKAHELGGFTYETQASLSGPYLTSVMGKAAGEREFWQLLRDPNTPLLQGIADYRPKDGETIELRLVSW

The query sequence (length=395) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2bb5:A 409 409 0.9949 0.9609 0.9609 0.0 2bb5:B, 5np4:A, 5nrp:A, 5nsa:A, 7qbd:A, 7qbd:B, 7qbe:A, 7qbe:C, 7qbf:A, 7qbg:C, 4zrp:A, 4zrp:B, 4zrq:A, 4zrq:B
2 7qbg:A 381 395 0.9595 0.9948 0.9595 0.0
3 8ixt:A 401 400 0.7570 0.7456 0.7475 0.0 8ixu:A
4 2bb6:A 414 414 0.7392 0.7053 0.7053 0.0 2bb6:B, 2bb6:C, 2bb6:D, 2bbc:A, 2v3n:A, 2v3p:A
5 4kki:A 398 417 0.3139 0.3116 0.2974 9.01e-36 4kkj:A
6 3kq4:A 385 418 0.2835 0.2909 0.2679 5.91e-25 3kq4:C, 3kq4:E, 2pmv:A, 2pmv:C
7 7q2x:D 994 45 0.0329 0.0131 0.2889 3.5 7q2y:D
8 7qen:D 1050 45 0.0329 0.0124 0.2889 3.9
9 1bsv:A 317 98 0.0608 0.0757 0.2449 4.6 1bws:A, 1e6u:A, 1e7q:A, 1e7r:A, 1e7s:A, 1fxs:A
10 8dgp:A 236 52 0.0405 0.0678 0.3077 5.2 2br9:A, 7c8e:A, 7c8e:B, 8dgm:A, 8dgn:A, 8dgp:B, 8dgp:C, 8dgp:D, 8dp5:D, 6eih:A, 8q1s:B, 8q1s:A, 3ual:A, 3ubw:A, 7v9b:A
11 5e12:A 202 57 0.0481 0.0941 0.3333 6.0 5e0y:A
12 4cqm:F 241 34 0.0329 0.0539 0.3824 6.5 4cqm:B, 4cqm:C, 4cqm:G, 4cqm:J, 4cqm:K, 4cqm:N, 4cqm:O
13 4zq0:A 234 52 0.0405 0.0684 0.3077 7.2 4zq0:B, 4zq0:C, 4zq0:D
14 5fal:A 435 69 0.0608 0.0552 0.3478 8.7 5fan:A, 4kec:A
15 1a47:A 683 35 0.0304 0.0176 0.3429 9.4 3bmv:A, 3bmw:A, 1ciu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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