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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ELVSWARKNDFSIEFSTLRLSMQLSIVANELHRAAEAAEEGGDEFHWHRNVFAPLKYSVAEIFDSIDMSQRLMDEQQNFV
KEDIAALLNQDWQAAIANCEQLLSETSGTLRELQDTLEAAGDKLQANLLRIQDANMGSGGSELVDKLVFDLQSKLDRIIS
WGQQAIDLWIGYDRHVHKFIRTAIDMDKNRIFSQRLRQSVQHYFDNPWTLTVANAERLLDMRDEELALRNEEVTGELPLE
LEYEEFSEINDQLAAMIEKALLVYQQEQRPLDLGAVLRDYLAQHPLPRHFDVARILVDQAVRLGVAEADFSGLPAEWLAI
NDYGAKVQAHVIDTY

The query sequence (length=335) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7nz2:D2 431 322 0.9612 0.7471 1.0000 0.0 7nyw:C, 7nyx:C, 7nyz:C, 7nz0:C, 7nz2:D1, 7nz2:C1, 7nz2:C2, 7nz3:C1, 7nz3:C2
2 7nz2:D2 431 26 0.0478 0.0371 0.6154 0.026 7nyw:C, 7nyx:C, 7nyz:C, 7nz0:C, 7nz2:D1, 7nz2:C1, 7nz2:C2, 7nz3:C1, 7nz3:C2
3 6hph:A 418 101 0.1045 0.0837 0.3465 0.74 9fb8:A, 5fhh:A, 5fhh:B, 6hpq:A, 6hpq:B, 6hpu:A, 6hpu:B
4 6dew:A 195 71 0.0627 0.1077 0.2958 1.1 6dew:B
5 7nfc:A 3562 164 0.1134 0.0107 0.2317 2.1 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
6 8ezb:C 3724 164 0.1134 0.0102 0.2317 2.2 8ezb:L
7 7sud:A 3740 164 0.1134 0.0102 0.2317 2.2
8 8eza:L 3720 164 0.1134 0.0102 0.2317 2.3 8eza:C, 7lt3:C, 7lt3:L
9 7su3:A 3802 164 0.1134 0.0100 0.2317 2.3
10 5y3r:C 3636 164 0.1134 0.0105 0.2317 2.4
11 7k0y:A 3669 164 0.1134 0.0104 0.2317 2.4
12 8ez9:L 3662 164 0.1134 0.0104 0.2317 2.4 8ez9:C
13 7z87:A 3689 164 0.1134 0.0103 0.2317 2.4
14 7sgl:A 3852 164 0.1134 0.0099 0.2317 2.4
15 7zay:A 566 45 0.0448 0.0265 0.3333 3.2 7scj:A
16 3nur:A 305 78 0.0627 0.0689 0.2692 3.4
17 8duj:G 3933 68 0.0687 0.0058 0.3382 3.7
18 8dve:G 3944 68 0.0687 0.0058 0.3382 3.8 8dtb:A, 8dve:D, 8dve:A, 8dve:J
19 7sck:A 642 45 0.0448 0.0234 0.3333 3.9
20 7uqx:A 583 45 0.0448 0.0257 0.3333 4.1 7uqy:A
21 8bpl:A 316 35 0.0388 0.0411 0.3714 4.7
22 5iqc:A 301 140 0.0985 0.1096 0.2357 6.1 5byl:A, 5byl:B, 5byl:C, 5byl:D, 6c5u:A, 6c5u:B, 6c5u:C, 6c5u:D, 6cav:A, 6cav:B, 6cav:C, 6cav:D, 6cey:A, 6cey:B, 6cey:C, 6cey:D, 6cgd:A, 6cgd:B, 6cgd:C, 6cgd:D, 6cgg:A, 6cgg:B, 6cgg:C, 6cgg:D, 6ch4:A, 6ch4:B, 6ch4:C, 6ch4:D, 5iqa:A, 5iqa:B, 5iqa:C, 5iqa:D, 5iqb:A, 5iqb:B, 5iqb:C, 5iqb:D, 5iqc:B, 5iqc:C, 5iqc:D, 5iqd:A, 5iqd:B, 5iqd:C, 5iqd:D, 5iqe:A, 5iqe:B, 5iqe:C, 5iqe:D, 5iqf:A, 5iqf:B, 5iqf:C, 5iqf:D, 5iqg:A, 5iqg:B, 5iqg:C, 5iqg:D, 5iqh:A, 5iqh:B, 5iqh:C, 5iqh:D, 5iqi:A, 5iqi:B, 5iqi:C, 5iqi:D, 4ork:A, 4ork:B, 4ork:C, 4ork:D
23 7jzv:A 253 36 0.0328 0.0435 0.3056 8.3 8grq:K, 1jm7:A, 7lyb:M
24 7ujd:A 577 110 0.0746 0.0433 0.2273 8.3 7uih:A
25 4myp:A 121 25 0.0299 0.0826 0.4000 8.7 4myp:B
26 4r8p:L 254 36 0.0328 0.0433 0.3056 8.8 2ckl:B, 8grm:N, 2h0d:B, 7nd1:A, 8pp7:L, 8pp7:N, 4r8p:N, 3rpg:C, 4s3o:B, 4s3o:E
27 6af6:A 383 45 0.0478 0.0418 0.3556 9.6 5zw2:A, 5zw7:A, 5zw8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218