Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYRL
ATLDAPREKHDHLTMKFADGQLIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKKIKPYLL
EQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSILGSTGKMQNELQVYGKTGEKCS
RCGAEIQKIKVAGRGTHFCPVCQQK

The query sequence (length=265) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4pd2:A 272 271 0.9962 0.9706 0.9742 0.0 3c58:A, 4cis:A, 4cis:B, 6fl1:A, 6h0s:A, 1kfv:A, 1kfv:B, 1nnj:A, 4pcz:A, 4pdg:A, 4pdi:A, 1pji:A, 1pjj:A, 1pm5:A, 6rnm:A, 6rno:A, 6rnr:A, 6ro2:A, 6rok:A, 6rp0:A, 6rp7:A, 1tdz:A, 1xc8:A, 2xzf:A, 2xzu:A
2 2f5q:A 273 273 0.4151 0.4029 0.4029 1.61e-64 2f5p:A, 2f5s:A, 4g4q:A, 3gpy:A, 3gq4:A, 3jr4:A, 3jr5:A, 1l1t:A, 1l1z:A, 1l2b:A, 1l2c:A, 1l2d:A, 1r2y:A, 1r2z:A
3 4g4n:A 253 267 0.3925 0.4111 0.3895 4.46e-58 2f5n:A, 2f5o:A, 4g4o:A, 4g4r:A, 3go8:A, 3gp1:A, 3gpp:A, 3gpu:A, 3gpx:A, 3gq3:A, 3gq5:A, 3sar:A, 3sas:A, 3sat:A, 3sau:A, 3sav:A, 3saw:A, 3sbj:A, 3u6c:A, 3u6d:A, 3u6e:A, 3u6l:A, 3u6m:A, 3u6o:A, 3u6p:A, 3u6q:A, 3u6s:A
4 1k82:A 260 265 0.3585 0.3654 0.3585 6.87e-52 1k82:B, 1k82:C, 1k82:D
5 1ee8:A 266 272 0.3547 0.3534 0.3456 3.20e-47 1ee8:B
6 6tc9:A 259 274 0.3547 0.3629 0.3431 1.69e-40 6tc6:A, 6tc6:C, 6tc9:C
7 3twm:A 261 269 0.3057 0.3103 0.3011 5.12e-24 3twm:B
8 1q3b:A 259 269 0.2264 0.2317 0.2230 4.12e-18 2ea0:A, 6fbu:A, 1k3w:A, 1k3x:A, 2opf:A, 2oq4:A, 2oq4:B, 1q39:A, 1q3c:A
9 8tjg:A 250 274 0.2868 0.3040 0.2774 8.13e-18
10 6vji:A 255 284 0.2642 0.2745 0.2465 7.59e-09 8th9:A, 6vji:B
11 6lwg:G 205 177 0.1849 0.2390 0.2768 1.32e-08
12 3a46:A 288 296 0.2755 0.2535 0.2466 1.27e-07 3a46:B, 4nrw:A, 4nrw:B, 3vk7:A, 3vk7:B, 3vk8:A, 3vk8:B
13 4mb7:A 273 256 0.2302 0.2234 0.2383 2.84e-07
14 5itt:A 271 188 0.1849 0.1808 0.2606 4.39e-07 8ftj:A, 5itr:A, 5itr:B, 5itr:C, 5itt:B, 5itt:C, 5itu:A, 5itu:B, 5itu:C, 5itx:A, 5itx:B, 5itx:E, 5ity:A, 5ity:B, 5ity:C, 6lwa:A, 6lwa:D, 6lwb:A, 6lwb:D, 6lwc:A, 6lwc:D, 6lwd:A, 6lwd:D, 6lwf:A, 6lwf:D, 6lwg:A, 6lwg:D, 6lwh:A, 6lwh:D, 6lwi:A, 6lwi:D, 6lwj:A, 6lwj:D, 6lwk:A, 6lwk:D, 6lwl:A, 6lwl:D, 6lwm:A, 6lwm:D, 6lwn:A, 6lwn:D, 6lwo:A, 6lwo:D, 6lwp:A, 6lwp:D, 6lwq:A, 6lwq:D, 6lwr:A, 6lwr:E
15 6lwn:G 237 175 0.1849 0.2068 0.2800 7.05e-07 6lwa:G, 6lwb:G, 6lwd:G, 6lwh:G, 6lwi:G, 6lwj:G, 6lwk:G, 6lwl:G, 6lwm:G, 6lwo:G, 6lwp:G, 6lwq:G
16 8b9n:A 239 112 0.1094 0.1213 0.2589 7.88e-04 8b9n:C
17 7z5a:A 264 112 0.1094 0.1098 0.2589 0.001 3w0f:A
18 1ffy:A 917 44 0.0528 0.0153 0.3182 0.023 1qu2:A, 1qu3:A
19 2g8g:A 524 118 0.1132 0.0573 0.2542 0.034 7thr:A
20 6bye:A 861 81 0.0943 0.0290 0.3086 2.5 6bye:B, 6byg:A, 6byg:B, 6byi:A, 6byi:B
21 5cvi:B 215 44 0.0528 0.0651 0.3182 3.6 5cvi:A
22 4cjx:A 297 86 0.0943 0.0842 0.2907 4.4 4cjx:B
23 6s1c:F 299 77 0.0981 0.0870 0.3377 5.8
24 6s1c:B 342 77 0.0981 0.0760 0.3377 6.0
25 7ywf:B 152 95 0.0792 0.1382 0.2211 6.2 7ywf:A, 7ywf:C
26 5hss:A 366 45 0.0566 0.0410 0.3333 6.7 5g1u:A, 5g1u:B, 5g1u:C, 5g1u:D, 5g1u:E, 5g1w:A, 5g1w:B, 5hss:B, 5hss:E, 5hss:C, 5hss:D, 6tfn:A, 6tfn:D, 6tfn:F, 6tfn:G, 6tfn:H, 6tfn:I, 6tfn:J
27 8fnc:5 297 43 0.0604 0.0539 0.3721 9.2 8fn6:5, 8fnf:5, 8fni:5, 8fnk:5

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218