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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLHM
AFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFIN
QEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFAKVLKDVKFPLMLDMYELCTPELQEKMV
SFRSKFKKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDW
HIAYVLLYGPRRVE

The query sequence (length=334) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6iil:A 341 340 1.0000 0.9795 0.9824 0.0 6iik:A, 6iik:B, 6iil:B, 6iim:A, 6iim:B, 6iin:A, 6iin:B
2 5k16:B 328 354 0.2545 0.2591 0.2401 4.99e-15 5cvm:A, 5k16:A, 5k1c:A, 5l8h:A, 5l8w:A
3 2y6e:B 339 371 0.2725 0.2684 0.2453 9.84e-15 2y6e:A, 2y6e:C, 2y6e:E, 2y6e:F
4 8bs3:A 324 350 0.2455 0.2531 0.2343 5.17e-14 8bs9:A, 8bs9:C
5 5k1b:A 264 337 0.2455 0.3106 0.2433 9.66e-13
6 7r2g:B 351 365 0.2844 0.2707 0.2603 1.27e-12 6cpm:C, 6cpm:D, 6crn:A, 6crn:B, 6crn:C, 6crn:D, 6gh9:A, 6gha:A, 6ml1:A, 6ml1:B, 7r2g:A
7 3mhs:A 455 351 0.2425 0.1780 0.2308 4.37e-12 6aqr:A, 4fip:A, 4fip:E, 4fjc:A, 4fk5:A, 6t9l:K, 4w4u:A, 4wa6:A, 4zux:U, 4zux:Z, 4zux:e, 4zux:j
8 5wch:A 350 328 0.2455 0.2343 0.2500 8.44e-12 5wch:B, 5wch:C, 5wch:D
9 8itn:A 350 370 0.2665 0.2543 0.2405 3.38e-11 8itn:C, 8itp:D, 8itp:B
10 2y5b:E 325 353 0.2635 0.2708 0.2493 1.40e-10 3i3t:A, 3i3t:C, 3i3t:E, 3i3t:G, 3mtn:A, 3mtn:C, 2y5b:A
11 5cvn:B 321 356 0.2335 0.2430 0.2191 2.86e-10 5cvo:B, 5cvo:E, 6jlq:A
12 7ay1:D 341 345 0.2545 0.2493 0.2464 3.88e-10 8a9j:D, 7ay2:B, 7zh3:D
13 4fjc:E 434 345 0.2186 0.1682 0.2116 1.14e-09 3m99:A, 3mhh:A
14 5cht:A 308 338 0.2275 0.2468 0.2249 2.60e-09 5cht:B, 5chv:A, 5chv:B
15 9fcj:D 312 325 0.2335 0.2500 0.2400 3.33e-09 7ay0:B, 9fci:D
16 8a9k:D 285 317 0.2156 0.2526 0.2271 4.48e-09 7ay0:D, 7zh4:D
17 8xpn:C 327 343 0.2395 0.2446 0.2332 5.09e-09
18 3n3k:A 355 336 0.2246 0.2113 0.2232 7.82e-09 2gfo:A, 8xpn:A, 8xpn:B
19 2hd5:A 315 356 0.2455 0.2603 0.2303 8.34e-09
20 5n9t:A 357 339 0.2425 0.2269 0.2389 1.68e-08 8d4z:A, 8d4z:B, 6f5h:A, 6f5h:B, 6m1k:A, 6m1k:B, 5n9r:A, 5n9r:B, 5n9t:B, 5nge:A, 5ngf:A, 5ngf:B, 5uqv:A, 5uqv:B, 5uqx:A, 5uqx:B, 6vn2:A, 6vn2:B, 6vn3:A, 6vn3:B, 6vn4:A, 6vn4:B, 6vn5:A, 6vn5:B, 6vn6:A, 6vn6:B, 5vs6:A, 5vs6:B, 5vsb:A, 5vsb:B, 5vsk:A, 5whc:A, 5whc:B, 7xhh:A, 7xhh:B, 7xhk:B
21 5nge:B 313 332 0.2455 0.2620 0.2470 1.05e-07 5vsk:B
22 3ihp:B 681 244 0.1497 0.0734 0.2049 1.59e-07 6dxh:A, 6dxt:A, 6dxt:B, 2g43:A, 2g43:B, 2g45:A, 2g45:D, 3ihp:A, 7ms5:A, 7ms5:B, 7ms6:A, 7ms7:A, 7ms7:B, 6nft:A, 6nft:B, 6p9g:A
23 3ihp:B 681 62 0.0629 0.0308 0.3387 0.008 6dxh:A, 6dxt:A, 6dxt:B, 2g43:A, 2g43:B, 2g45:A, 2g45:D, 3ihp:A, 7ms5:A, 7ms5:B, 7ms6:A, 7ms7:A, 7ms7:B, 6nft:A, 6nft:B, 6p9g:A
24 4wa6:D 415 150 0.1198 0.0964 0.2667 3.10e-07 4w4u:D
25 4wa6:D 415 22 0.0299 0.0241 0.4545 2.0 4w4u:D
26 7w3u:A 343 370 0.2485 0.2420 0.2243 1.26e-06 7w3r:A, 7w3u:B, 7w3u:C
27 3nhe:A 338 373 0.2605 0.2574 0.2332 8.88e-06 6dgf:A, 2ibi:A, 3v6c:A, 3v6e:A, 5xu8:A, 5xve:A
28 5k1a:A 239 66 0.0719 0.1004 0.3636 3.38e-05 5k1a:C, 5k1a:E, 5k1a:G
29 5ohk:A 304 340 0.2275 0.2500 0.2235 4.09e-05 5ohn:A, 5ohn:C
30 5gvi:A 326 351 0.2216 0.2270 0.2108 4.40e-05
31 8d1t:A 330 364 0.2425 0.2455 0.2225 1.16e-04 8d0a:A, 5ohp:A
32 5txk:A 317 349 0.2425 0.2555 0.2321 2.15e-04
33 8p1q:A 439 65 0.0689 0.0524 0.3538 2.95e-04 8p1p:B, 8p1q:B
34 8p1q:A 439 34 0.0389 0.0296 0.3824 0.019 8p1p:B, 8p1q:B
35 8p14:A 331 65 0.0689 0.0695 0.3538 4.22e-04 8hje:A, 7tuo:A
36 8p14:A 331 34 0.0389 0.0393 0.3824 0.010 8hje:A, 7tuo:A
37 6h4h:A 458 65 0.0689 0.0502 0.3538 5.33e-04 6h4h:B, 8p1p:A
38 6h4h:A 458 34 0.0389 0.0284 0.3824 0.017 6h4h:B, 8p1p:A
39 8ssi:A 283 71 0.0689 0.0813 0.3239 0.002 8ssi:C
40 5fwg:A 217 36 0.0359 0.0553 0.3333 0.34 5fwg:B, 3fyg:A, 3fyg:B, 2gst:A, 2gst:B, 3gst:A, 3gst:B, 4gst:A, 4gst:B, 5gst:A, 5gst:B, 6gst:A, 6gst:B, 6gsu:A, 6gsu:B, 6gsv:A, 6gsv:B, 6gsw:A, 6gsw:B, 6gsx:A, 6gsx:B, 6gsy:A, 6gsy:B, 1mtc:A, 1mtc:B
41 8y6o:U 458 128 0.0838 0.0611 0.2188 1.0 8h6e:4T, 8h6j:4T, 6qw6:U, 6qx9:U
42 7opy:F 217 36 0.0329 0.0507 0.3056 2.2 7opy:A, 7opy:B, 7opy:C, 7opz:C, 7opz:A, 7opz:B, 7opz:D
43 4af0:A 395 49 0.0479 0.0405 0.3265 2.4 4af0:B
44 2f3m:A 218 43 0.0389 0.0596 0.3023 2.9 2f3m:B, 2f3m:C, 2f3m:D, 2f3m:E, 2f3m:F, 1xw6:A, 1xw6:B, 1xw6:C, 1xw6:D, 1xwk:A, 1xwk:B, 1xwk:C, 1yj6:A, 1yj6:B, 1yj6:C
45 6dcd:A 406 83 0.0778 0.0640 0.3133 4.6
46 2ab6:A 217 42 0.0389 0.0599 0.3095 5.7 2ab6:B, 2ab6:C, 2ab6:D, 2c4j:A, 2c4j:B, 2c4j:C, 2c4j:D, 3gur:A, 3gur:B, 3gur:C, 3gur:D, 1hna:A, 1hnb:A, 1hnb:B, 1hnc:A, 1hnc:B, 1hnc:C, 1hnc:D, 5hwl:A, 5hwl:B, 1xw5:A, 1xw5:B, 1ykc:A, 1ykc:B
47 2dtt:B 115 69 0.0659 0.1913 0.3188 5.9 2dtt:A, 2dtt:C, 2dtt:D, 2dtt:F, 2dtt:E
48 1b4p:A 217 36 0.0299 0.0461 0.2778 6.0
49 1a0c:A 437 58 0.0479 0.0366 0.2759 7.6 1a0c:B, 1a0c:C, 1a0c:D
50 3ge1:A 499 81 0.0569 0.0381 0.2346 8.0 3ge1:B, 3ge1:C, 3ge1:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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