Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ELNPSLVISLSTGVSLFLGRFVFFNFQRENVGKQVPSQNGISHFEAGDERAKEYVSLLKSNDPVGFNIVDVLAWGSIGHI
VAYYILATSSNGYDPNFF

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wgh:G 98 98 1.0000 1.0000 1.0000 3.93e-68
2 5zji:G 97 97 0.8571 0.8660 0.8660 3.35e-60
3 3lw5:G 95 94 0.8571 0.8842 0.8936 5.95e-60 6igz:G, 2o01:G, 2wsc:G, 2wse:G, 2wsf:G, 4xk8:G, 4xk8:g
4 7wg5:AG 99 98 0.8776 0.8687 0.8776 2.11e-59 7dkz:G, 8j6z:G, 8j7a:G, 8j7b:G, 5l8r:G, 7wfd:AG, 7wfe:BG, 7wg5:BG, 6yac:G, 6yez:G, 6zoo:G, 6zxs:G
5 8bcv:G 94 94 0.8061 0.8404 0.8404 9.76e-56
6 4y28:G 91 95 0.7551 0.8132 0.7789 1.33e-47
7 6l35:G 98 98 0.6327 0.6327 0.6327 4.93e-43 8htu:G, 7ksq:G, 7kux:G, 7xqp:G
8 4rku:G 84 88 0.6939 0.8095 0.7727 1.10e-41
9 7a4p:G 99 94 0.5204 0.5152 0.5426 5.71e-32 6zzx:G, 6zzy:G
10 7yca:G 95 86 0.4490 0.4632 0.5116 2.32e-27
11 7zq9:G 95 92 0.3776 0.3895 0.4022 3.84e-17 7d0j:G, 7dz7:G, 7dz8:G, 8h2u:G, 7zqd:G, 7zqd:G2
12 7zqc:G 80 89 0.3673 0.4500 0.4045 2.29e-16 7bgi:G, 7blx:G, 6jo5:G, 6jo6:G
13 8cmo:G 93 93 0.3061 0.3226 0.3226 1.80e-14
14 6ijo:G 70 89 0.3265 0.4571 0.3596 5.32e-14 7r3k:G
15 6sl5:G 101 98 0.3469 0.3366 0.3469 4.95e-08
16 7a4p:K 86 80 0.3061 0.3488 0.3750 4.62e-07 6zzx:K, 6zzy:K
17 6igz:K 80 84 0.2857 0.3500 0.3333 2.53e-06
18 8j6z:K 84 81 0.2755 0.3214 0.3333 8.53e-06 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
19 8bcv:K 88 82 0.2959 0.3295 0.3537 1.71e-05 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
20 8htu:K 81 81 0.2449 0.2963 0.2963 1.63e-04 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
21 8cmo:K 89 29 0.1633 0.1798 0.5517 2.19e-04
22 7wfd:AK 65 29 0.1224 0.1846 0.4138 3.11e-04 7wfe:BK, 7wg5:AK, 7wg5:BK
23 8wgh:K 83 82 0.2551 0.3012 0.3049 3.34e-04
24 7dz7:K 86 20 0.1531 0.1744 0.7500 3.96e-04 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
25 8j7a:K 56 26 0.1122 0.1964 0.4231 0.005
26 5uty:H 232 97 0.3061 0.1293 0.3093 0.009 9ber:H, 5d9q:H, 5d9q:F, 5d9q:N, 5fyl:H, 7lx2:H, 7lx2:N, 7lx2:P, 7lx3:H, 7lx3:N, 7lx3:P, 7lxm:H, 7lxm:N, 7lxm:P, 7lxn:H, 7lxn:I, 7lxn:J, 6ot1:m, 6ot1:F, 6ot1:Q, 4tvp:H, 6vlr:C
27 7yca:K 87 50 0.2347 0.2644 0.4600 0.013
28 6sl5:K 84 72 0.2245 0.2619 0.3056 1.5
29 8wm6:K 69 31 0.1429 0.2029 0.4516 2.0 8wmj:K, 8wmv:K, 8wmw:K
30 4xk8:k 46 17 0.0918 0.1957 0.5294 2.3 4xk8:K
31 6kik:A 275 55 0.1735 0.0618 0.3091 3.2 5dan:A, 6kiy:A, 6ky6:A, 6ky6:B
32 3tox:A 254 42 0.1531 0.0591 0.3571 3.8 3tox:B, 3tox:C, 3tox:D, 3tox:E, 3tox:F, 3tox:G, 3tox:I
33 8b4l:C 311 18 0.0918 0.0289 0.5000 4.1 8b4l:E, 8b4l:A, 8b4l:B, 8b4l:D, 8b4l:F, 8b4m:B, 8b4m:D, 8b4m:E, 8b4m:F
34 5odn:D 106 28 0.1020 0.0943 0.3571 6.5 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
35 4a42:A 127 14 0.1020 0.0787 0.7143 7.0 4a42:B
36 7mqa:SI 803 49 0.1327 0.0162 0.2653 7.2
37 7mq8:SI 844 49 0.1327 0.0154 0.2653 7.2 7mq9:SI
38 3ib9:A 521 28 0.1429 0.0269 0.5000 7.3 3ib9:B, 1xny:A, 1xny:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218