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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVDLLFVKDLAFVDPDDCTP
LKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQFYEVLGIVTLEDVIEEIIKSEILDETDLYTDNRTKKKVAHR
ERKQDFSAFKQTDSEMKVKISPQLLLAMHRFLATEVEAFSPSQMSEKILLRLLKHPNVIQELKYDEKNKKAPEYYLYQRN
KPVDYFVLILQGKVEVEAGKEGMKFEASAFSYYGVMALTASPVLLQVYIPDYSVRALSDLQFVKISRQQYQNALMLEHH

The query sequence (length=319) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6n7e:D 319 319 1.0000 1.0000 1.0000 0.0 4iy0:A, 5lxq:A, 5lxq:H, 6n7e:A, 4p1g:A, 4p1o:A, 4p1o:B
2 6n7e:C 302 327 0.9154 0.9669 0.8930 0.0 6n7e:B
3 5k25:C 150 147 0.3323 0.7067 0.7211 1.42e-74
4 7cfk:B 166 139 0.1442 0.2771 0.3309 1.55e-13 7cfi:A, 7cfk:A
5 3jtf:B 125 126 0.1191 0.3040 0.3016 1.57e-12 3jtf:A
6 7m1t:A 321 132 0.1348 0.1340 0.3258 4.46e-10 7m1t:B, 7msu:A
7 4hg0:A 232 137 0.1223 0.1681 0.2847 1.58e-09 3nqr:A, 3nqr:B, 3nqr:C, 3nqr:D, 5yz2:A, 5yz2:B
8 3lfr:B 128 125 0.1097 0.2734 0.2800 1.60e-07 3lfr:A
9 3oi8:A 156 96 0.0940 0.1923 0.3125 3.16e-06 3oi8:B
10 3hf7:A 127 127 0.0972 0.2441 0.2441 0.010
11 3lhh:A 125 124 0.0940 0.2400 0.2419 0.23
12 4xbo:A 228 46 0.0470 0.0658 0.3261 0.25 4cne:A, 4cne:B, 4xbo:B
13 2uvh:A 404 137 0.1160 0.0916 0.2701 0.38 2uvi:A, 2uvj:A
14 8h1c:B 983 66 0.0690 0.0224 0.3333 0.84 8h1c:A, 7xjz:A, 7xk0:A, 7xk1:A, 7xk1:C
15 7pzb:A 227 55 0.0439 0.0617 0.2545 6.5 7pza:A, 7pza:B, 7pzb:B
16 7nnl:B 682 41 0.0408 0.0191 0.3171 7.4 2a00:A, 2a29:A, 7bgy:B, 7bh1:B, 7bh2:B, 6hra:B, 6hrb:B, 7lc3:B, 7lc6:B, 5mrw:B, 5mrw:F, 5mrw:J, 7nnp:B, 7zrd:B, 7zre:B, 7zrg:B, 7zrh:B, 7zri:B, 7zrj:B, 7zrk:B, 7zrl:B, 7zrm:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218