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BioLiP
>protein
ELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYA

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6evq:A 70 54 0.9815 0.7571 0.9815 1.23e-32 6evq:B, 3gjo:A, 3gjo:B, 3gjo:C, 3gjo:D, 5n74:A, 5n74:B, 5n74:C, 5n74:D, 5n74:E, 5n74:F, 5n74:G, 5n74:H, 7olg:A, 7olg:B
2 5m9e:B 71 47 0.3889 0.2958 0.4468 5.72e-06 5m9e:A, 5m9e:C, 5m9e:D
3 1qs0:A 407 25 0.1852 0.0246 0.4000 1.3
4 1htw:A 158 19 0.2037 0.0696 0.5789 1.5 1htw:B, 1htw:C
5 1y7i:B 262 32 0.2037 0.0420 0.3438 1.8 1xkl:A, 1xkl:B, 1xkl:C, 1xkl:D, 1y7i:A
6 2dq0:A 447 47 0.2593 0.0313 0.2979 1.9 2dq0:B, 2zr2:A, 2zr2:B
7 7myl:B 158 24 0.1852 0.0633 0.4167 2.4 5ecc:A, 5ecc:B, 5ecx:A, 5ecx:B, 7myl:A, 7myl:C, 7myl:D, 7myl:E, 7myl:F, 7reg:A, 7reg:B, 7rgj:A, 7rgj:B
8 4eot:A 92 23 0.2407 0.1413 0.5652 3.2 4eot:B
9 2wty:B 97 23 0.2222 0.1237 0.5217 4.7 4auw:A, 4auw:B, 4auw:E, 4auw:F, 2wt7:B, 2wty:A
10 1a05:A 357 58 0.3148 0.0476 0.2931 5.6 1a05:B
11 3acw:A 284 28 0.2407 0.0458 0.4643 6.7 3acx:A, 3acy:A, 3adz:A, 3ae0:A, 3ae0:B, 4e9u:A, 4e9z:A, 4ea0:A, 4ea0:B, 4ea1:A, 4ea2:A, 4f6v:A, 4f6x:A, 3lgz:B, 3npr:A, 3nri:A, 3tfn:A, 3tfp:A, 3tfv:A, 3vje:A, 3vje:B, 3w7f:A, 3w7f:B, 2zcq:A, 2zcr:A, 2zcs:A, 2zy1:A
12 6k02:B 269 35 0.1852 0.0372 0.2857 8.1 6k02:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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