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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ELLGSDAPLEKVCSALLEYESKRKSLLEDEQDDIEPVWLQLATLKFIGNNRKLIPYKIAIKNPVIPSSSEACLIVKDPQR
VYKDLVNEAGLSKVVTRVIGLSKLKAKWNSYEQKRQLRDQFDIFLADDRVIPMLPRILGKTFYQKSKVPVPVKISKGTAE
QLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPLWNNPN
LKE

The query sequence (length=243) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8esq:K 251 244 1.0000 0.9681 0.9959 1.42e-179 8esr:K, 8etg:K, 8eth:K, 8eti:K, 8eup:K, 8euy:K, 8ev3:K
2 8i9p:CB 269 257 0.3457 0.3123 0.3268 1.33e-37 8i9r:CB, 8i9t:CB, 8i9v:CB, 8i9w:CB, 8i9x:CB, 8i9y:CB, 8i9z:CB, 8ia0:CB, 8pv1:CB, 8pv3:CB, 8pv4:CB, 8pv7:CB, 8pvk:CB, 6rxt:UZ, 6rxu:UZ, 6rxv:UZ, 6rxy:UZ, 6rxz:UZ
3 5jpq:k 182 226 0.2881 0.3846 0.3097 8.75e-29 5oql:Q
4 8fkp:SL 243 193 0.2428 0.2428 0.3057 1.25e-25 8fkq:SL, 8fkr:SL, 8fks:SL, 8fkt:SL, 8fku:SL, 8fkv:SL, 8fkw:SL, 8fkx:SL, 8fky:SL, 8fkz:SL, 8fl2:SL, 8fl6:SL, 8fla:SL, 8fld:SL, 8ine:u, 8inf:u, 8ipx:N, 8ipy:c, 8ir3:s
5 7d5s:RI 252 252 0.2881 0.2778 0.2778 1.87e-13 7ajt:UZ, 6ke6:RI, 6lqp:RI, 6lqu:RI, 7suk:SN, 5wlc:SN, 5wyj:U5, 5wyk:U5, 5ydt:U5, 6zqa:UZ, 6zqb:UZ, 6zqc:UZ
6 7r6q:K 286 261 0.2798 0.2378 0.2605 2.44e-10 7btb:K, 6c0f:K, 6cb1:K, 8e5t:K, 6elz:K, 6em1:K, 6em3:K, 6em4:K, 6em5:K, 3jct:K, 6m62:K, 7nac:K, 7ohp:K, 7ohq:K, 7ohr:K, 7ohs:K, 7ohv:K, 7ohw:K, 7ohx:K, 7r7a:K, 7u0h:K, 7uoo:K, 7uqb:K, 7uqz:K, 7v08:K, 8v83:K, 8v84:K, 8v87:K, 6ylx:K, 6yly:K, 5z3g:H
7 4v4n:AA 216 140 0.1523 0.1713 0.2643 2.73e-05 4v6u:BA
8 1u63:A 214 103 0.1193 0.1355 0.2816 1.30e-04 1i2a:A, 1u63:C
9 4v6w:Cz 217 111 0.1193 0.1336 0.2613 2.44e-04 6xu6:Cz, 6xu7:Cz, 6xu8:Cz
10 8brm:Ln 211 117 0.1070 0.1232 0.2222 0.001 8br8:Ln, 8bsi:Ln, 8bsj:Ln, 8btd:Ln, 8btr:Ln
11 8pv4:Lr 214 111 0.1029 0.1168 0.2252 0.002 8i9r:Lq, 8i9t:Lq, 8i9v:Lq, 8i9w:Lq, 8i9x:Lq, 8i9y:Lq, 8i9z:Lq, 8ia0:Lq, 8pv6:Lr, 8pv8:Lt, 8pvk:Lr
12 7a01:42 217 88 0.0947 0.1060 0.2614 0.019 5aj0:Au, 8bhf:l1, 8btk:Bv, 6d90:K, 6d9j:K, 8fku:BB, 8fkv:BB, 8fkw:BB, 8fkx:BB, 8fky:BB, 8fl2:BB, 8fl3:BB, 8fl4:BB, 8g5y:Lz, 8g5z:Lz, 8g60:Lz, 8g61:Lz, 8g6j:Lz, 6gz3:Au, 6gz4:Au, 6gz5:Au, 6hcf:u3, 6hcj:w3, 6hcm:u3, 6hcq:w3, 8idy:t, 8ifd:2l, 8ife:2l, 8inf:q, 6ip5:2l, 3j7r:z, 5lks:Lz, 7ls1:L1, 7ls2:L1, 6mtb:u, 6mtc:u, 6mtd:u, 7nwg:w3, 7o7y:Bv, 7o7z:Bv, 7o80:Bv, 7o81:Bv, 8ohd:Lz, 8oj0:Lz, 8oj5:Lz, 8oj8:Lz, 6olg:Au, 8p2k:Bv, 6p5i:AK, 6p5j:AK, 6p5k:AK, 6p5n:AK, 8q87:Bv, 7qgg:Cz, 6qzp:Lz, 6sgc:B, 5t2c:l, 4ug0:Lz, 4v6x:Cz, 8xsx:Lz, 6y6x:Lz, 6z6l:Lz, 6z6m:Lz, 6z6n:Lz, 7zjw:Lx, 6zm7:Lz, 6zme:Lz, 6zmi:Lz, 6zmo:Lz, 6zvk:42
13 4v8m:BJ 214 90 0.0864 0.0981 0.2333 0.028
14 4d5y:u 210 111 0.0905 0.1048 0.1982 0.33 4d67:u, 4ujc:Bu, 4ujd:Au, 4uje:Cu, 4v5z:B5
15 4v3p:LA 216 88 0.0782 0.0880 0.2159 0.56 4v7e:Cz
16 8c3a:l1 217 32 0.0494 0.0553 0.3750 0.65 8c3a:L1, 8cq7:l1, 8cq7:L1, 8cqw:l1, 8cqw:L1, 8cre:l1, 8cre:L1, 8oeq:l1, 8oeq:L1
17 4uop:B 409 19 0.0453 0.0269 0.5789 2.3 4uop:A
18 4iix:A 338 54 0.0782 0.0562 0.3519 2.9 4iix:B, 4iiy:A, 4iiy:B, 3tlb:A, 3tlb:B, 3tlc:A, 3tlc:B, 3tle:A, 3tle:B, 3tlz:A, 3tlz:B
19 5juo:E 171 32 0.0453 0.0643 0.3438 3.6 5jup:E, 5jus:E, 5jut:E, 5juu:E
20 8bqd:BT 217 32 0.0453 0.0507 0.3438 4.1 8aaf:w, 8agt:w, 8agu:w, 8agv:w, 8agw:w, 8agx:w, 8agz:w, 8bn3:B, 8bqx:BT, 8eub:E, 8evp:E, 8evq:E, 8evr:E, 8evs:E, 8evt:E, 8ewb:E, 8ewc:E, 6gqb:BA, 6gqv:BA, 8hfr:As, 5it7:qq, 3j0l:B, 3j0o:B, 3j0p:B, 3j0q:B, 3j6x:L1, 3j6y:L1, 3j77:L1, 3j78:L1, 5jcs:I, 8k2d:L1, 8k82:L1, 7nac:a, 2noq:G, 6oig:z, 7r7a:a, 7r7c:a, 6r84:L, 6r86:L, 6r87:L, 6tb3:BT, 6uz7:Bq, 4v4b:BA, 4v6i:BA, 4v7h:BA, 4v7r:BA, 4v7r:DA, 8v83:a, 8v84:a, 8v87:a, 4v91:t, 6woo:q, 6xiq:L1, 7zw0:LB
21 6ylg:o 177 32 0.0453 0.0621 0.3438 4.4 6ylh:o
22 1xov:A 315 111 0.1029 0.0794 0.2252 5.9
23 7bam:A 1904 52 0.0617 0.0079 0.2885 7.6 7bam:B, 7ban:A, 7ban:B, 7bao:A, 7plp:A, 7plp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218