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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVA
IIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFR
ELERVLNFPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWN
TLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGGALELNWTLPGQP
DNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEAR
IPACSL

The query sequence (length=406) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1dko:A 410 406 0.9975 0.9878 0.9975 0.0 1dkp:A, 1dkq:A, 4tsr:A, 7z1j:A, 7z2s:A, 7z2t:A, 7z2w:A, 7z2y:A, 7z3v:A
2 4aro:A 401 407 0.4926 0.4988 0.4914 1.09e-138
3 4arv:A 409 410 0.4507 0.4474 0.4463 4.21e-122 4arv:B
4 1nt4:A 391 404 0.3128 0.3248 0.3144 2.69e-60 1nt4:B, 6rmr:A
5 3ntl:A 388 407 0.3128 0.3273 0.3120 2.19e-58 3ntl:B
6 3it3:A 337 101 0.0739 0.0890 0.2970 0.055 4e3w:A, 4e3w:B, 3it0:A, 3it0:B, 3it3:B
7 1nd6:B 343 59 0.0517 0.0612 0.3559 0.83 1cvi:A, 1cvi:B, 1cvi:C, 1cvi:D, 2hpa:A, 2hpa:B, 2hpa:D, 1nd5:A, 1nd5:B, 1nd5:C, 1nd5:D, 1nd6:A, 1nd6:C, 1nd6:D
8 7v40:A 432 126 0.0862 0.0810 0.2778 6.8 7v41:A, 7v42:A, 7v43:A, 7v44:A, 7v45:A, 7v46:A
9 8gzg:Z 1175 52 0.0443 0.0153 0.3462 7.9
10 8gzh:Z 1217 52 0.0443 0.0148 0.3462 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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