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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ELIVYFSTQSNNTHRFVQKLDAESIRIPIDEEERIKVDEDYVLIVPTYSGGKVTQVDAHGAVPKQVIHFLNDPDNRKHCL
GVISSGNTNFGDSFAIAGPVISYKLKVPLLYQFELIGTKEDVEEVNRIISETFN

The query sequence (length=134) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mmp:E 139 137 1.0000 0.9640 0.9781 6.34e-95 6ebq:A, 6ebq:B, 7mmp:G, 7mmp:F, 7mmp:H, 7mmq:E, 7mmq:F, 7mmq:H, 7mmr:E, 7mmr:G, 7mmr:F, 7mmr:H, 7mms:E, 7mms:G, 7mms:F, 7mms:H
2 7mmq:G 124 134 0.9179 0.9919 0.9179 1.21e-84
3 3n3a:C 131 131 0.5075 0.5191 0.5191 1.97e-46 3n39:C, 3n39:D, 3n3a:D, 3n3b:C, 3n3b:D
4 4bmo:B 118 122 0.3358 0.3814 0.3689 5.34e-19 4bmp:B, 2x2o:A, 2x2p:A, 2xod:A, 2xoe:A, 7z3d:B, 7z3e:B
5 1rlj:A 135 134 0.3507 0.3481 0.3507 4.04e-15
6 4n82:B 153 148 0.3358 0.2941 0.3041 3.94e-11 4n82:A
7 8g64:A 169 80 0.1791 0.1420 0.3000 0.061
8 1itw:A 740 38 0.1194 0.0216 0.4211 0.65 1itw:B, 1itw:C, 1itw:D, 1j1w:A, 1j1w:B, 1j1w:C, 1j1w:D
9 8xus:B 1063 55 0.1418 0.0179 0.3455 1.5 8if2:B
10 8bon:B 1070 55 0.1418 0.0178 0.3455 1.6 8bon:A, 8bon:C, 7nd7:A, 7nd7:B, 7nd7:C, 8xut:B, 8xut:A
11 8h3m:C 930 55 0.1418 0.0204 0.3455 1.7
12 7y1u:A 723 38 0.0970 0.0180 0.3421 3.2
13 1tqy:A 421 58 0.1343 0.0428 0.3103 8.5 1tqy:C, 1tqy:E, 1tqy:G
14 4fbg:A 399 27 0.0746 0.0251 0.3704 8.7 4fbg:E, 4fbg:G, 4fbg:H, 4fbg:I, 4fbg:K, 4fbg:M, 4fbg:P
15 8jaf:A 320 30 0.0896 0.0375 0.4000 9.5 8j97:A, 8ja3:B, 8ja3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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