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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ELIVYFSTQSNNTHRFVQKLDAESIRIPIDEEERIKVDEDYVLIVPTYSGGKVTDAGQVDAHGAVPKQVIHFLNDPDNRK
HCLGVISSGNTNFGDSFAIAGPVISYKLKVPLLYQFELIGTKEDVEEVNRIISETFN

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mmp:E 139 137 1.0000 0.9856 1.0000 2.15e-99 6ebq:A, 6ebq:B, 7mmp:G, 7mmp:F, 7mmp:H, 7mmq:E, 7mmq:F, 7mmq:H, 7mmr:E, 7mmr:G, 7mmr:F, 7mmr:H, 7mms:E, 7mms:G, 7mms:F, 7mms:H
2 7mmq:G 124 137 0.8978 0.9919 0.8978 3.85e-84
3 3n3a:C 131 134 0.4964 0.5191 0.5075 8.05e-46 3n39:C, 3n39:D, 3n3a:D, 3n3b:C, 3n3b:D
4 4bmo:B 118 125 0.3285 0.3814 0.3600 1.73e-18 4bmp:B, 2x2o:A, 2x2p:A, 2xod:A, 2xoe:A, 7z3d:B, 7z3e:B
5 1rlj:A 135 136 0.3358 0.3407 0.3382 4.10e-15
6 4n82:B 153 150 0.3431 0.3072 0.3133 6.80e-13 4n82:A
7 8g64:A 169 115 0.2190 0.1775 0.2609 0.085
8 8xus:B 1063 55 0.1387 0.0179 0.3455 1.8 8if2:B
9 8bon:B 1070 55 0.1387 0.0178 0.3455 1.8 8bon:A, 8bon:C, 7nd7:A, 7nd7:B, 7nd7:C, 8xut:B, 8xut:A
10 8h3m:C 930 55 0.1387 0.0204 0.3455 2.0
11 2c80:A 208 54 0.1460 0.0962 0.3704 3.2 2c80:B, 2ca8:A, 2caq:A, 2f8f:A, 2f8f:B, 1oe7:A, 1oe7:B, 1oe8:A, 1oe8:B
12 1u3i:A 208 50 0.1387 0.0913 0.3800 3.6
13 4gx2:B 548 54 0.1387 0.0347 0.3519 4.5 4gvl:A, 4gvl:B, 4gvl:D, 4gvl:C, 4gx0:B, 4gx0:C, 4gx1:B, 4gx1:C, 4gx2:C, 4gx5:B, 4gx5:C
14 4gx0:D 376 48 0.1314 0.0479 0.3750 5.8 4gx0:A, 4gx1:A, 4gx1:D, 4gx2:A, 4gx2:D, 4gx5:A, 4gx5:D
15 7t7u:D 168 76 0.1752 0.1429 0.3158 6.1 4lms:B, 4lms:D, 7t7u:B
16 4fbg:A 399 27 0.0730 0.0251 0.3704 8.9 4fbg:E, 4fbg:G, 4fbg:H, 4fbg:I, 4fbg:K, 4fbg:M, 4fbg:P
17 8jaf:A 320 30 0.0876 0.0375 0.4000 9.2 8j97:A, 8ja3:B, 8ja3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218