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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ELIVYFSTQSNNTHRFVQKLDAESIRIPIDEEERIKVDEDYVLIVPTYSGGGAVPKQVIHFLNDPDNRKHCLGVISSGNT
NFGDSFAIAGPVISYKLKVPLLYQFELIGTKEDVEEVNRIISETFNA

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mmp:E 139 138 1.0000 0.9137 0.9203 3.83e-88 6ebq:A, 6ebq:B, 7mmp:G, 7mmp:F, 7mmp:H, 7mmq:E, 7mmq:F, 7mmq:H, 7mmr:E, 7mmr:G, 7mmr:F, 7mmr:H, 7mms:E, 7mms:G, 7mms:F, 7mms:H
2 7mmq:G 124 126 0.9685 0.9919 0.9762 6.69e-86
3 3n3a:C 131 127 0.5354 0.5191 0.5354 1.27e-46 3n39:C, 3n39:D, 3n3a:D, 3n3b:C, 3n3b:D
4 4bmo:B 118 114 0.3465 0.3729 0.3860 2.31e-20 4bmp:B, 2x2o:A, 2x2p:A, 2xod:A, 2xoe:A, 7z3d:B, 7z3e:B
5 1rlj:A 135 126 0.3701 0.3481 0.3730 1.42e-16
6 4n82:B 153 147 0.3465 0.2876 0.2993 1.63e-11 4n82:A
7 8g64:A 169 72 0.1732 0.1302 0.3056 0.005
8 8bon:B 1070 56 0.1496 0.0178 0.3393 1.1 8bon:A, 8bon:C, 7nd7:A, 7nd7:B, 7nd7:C, 8xut:B, 8xut:A
9 8xus:B 1063 56 0.1496 0.0179 0.3393 1.1 8if2:B
10 8h3m:C 930 56 0.1496 0.0204 0.3393 1.2
11 1cen:A 334 25 0.1024 0.0389 0.5200 1.3
12 3qnm:A 231 128 0.2441 0.1342 0.2422 1.4
13 4fbg:A 399 27 0.0787 0.0251 0.3704 3.9 4fbg:E, 4fbg:G, 4fbg:H, 4fbg:I, 4fbg:K, 4fbg:M, 4fbg:P
14 5jca:L 471 44 0.1181 0.0318 0.3409 5.0 5jfc:L
15 5vj7:A 462 44 0.1181 0.0325 0.3409 5.4
16 6e12:B 212 59 0.1260 0.0755 0.2712 7.0
17 8jaf:A 320 30 0.0945 0.0375 0.4000 7.5 8j97:A, 8ja3:B, 8ja3:A
18 1tqy:A 421 41 0.1102 0.0333 0.3415 8.7 1tqy:C, 1tqy:E, 1tqy:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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