Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ELIVYFSTQSNNTHRFVQKLDAESIRIPIDEEERIKVDEDYVLIVPTYSGGAVPKQVIHFLNDPDNRKHCLGVISSGNTN
FGDSFAIAGPVISYKLKVPLLYQFELIGTKEDVEEVNRIISET

The query sequence (length=123) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mmp:E 139 135 1.0000 0.8849 0.9111 1.23e-84 6ebq:A, 6ebq:B, 7mmp:G, 7mmp:F, 7mmp:H, 7mmq:E, 7mmq:F, 7mmq:H, 7mmr:E, 7mmr:G, 7mmr:F, 7mmr:H, 7mms:E, 7mms:G, 7mms:F, 7mms:H
2 7mmq:G 124 123 0.9837 0.9758 0.9837 2.98e-84
3 3n3a:C 131 124 0.5447 0.5115 0.5403 1.24e-45 3n39:C, 3n39:D, 3n3a:D, 3n3b:C, 3n3b:D
4 4bmo:B 118 113 0.3496 0.3644 0.3805 7.96e-21 4bmp:B, 2x2o:A, 2x2p:A, 2xod:A, 2xoe:A, 7z3d:B, 7z3e:B
5 1rlj:A 135 125 0.3821 0.3481 0.3760 4.11e-18
6 4n82:B 153 144 0.3496 0.2810 0.2986 1.24e-10 4n82:A
7 8g64:A 169 72 0.1870 0.1361 0.3194 0.045
8 5veg:B 149 47 0.1220 0.1007 0.3191 2.3 5veg:A, 5veg:C
9 2zy2:A 521 67 0.1545 0.0365 0.2836 2.9
10 4fbg:A 399 27 0.0813 0.0251 0.3704 3.7 4fbg:E, 4fbg:G, 4fbg:H, 4fbg:I, 4fbg:K, 4fbg:M, 4fbg:P
11 1rxq:D 169 49 0.1138 0.0828 0.2857 6.1
12 3c4q:A 393 34 0.1057 0.0331 0.3824 7.2 3c4q:B, 3c4v:A, 3c4v:B
13 8jaf:A 320 30 0.0976 0.0375 0.4000 7.6 8j97:A, 8ja3:B, 8ja3:A
14 1tqy:A 421 41 0.1138 0.0333 0.3415 8.1 1tqy:C, 1tqy:E, 1tqy:G

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218