Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ELFQTADWKKEKHVPVIEVLRAEGGVVEVKVSVGKEIPHPNTTEHHIAWIELVFQPEGSKFPYVVGRAEFAAHGASVDGP
NTSGVYTDPVAVFAFKAEKSGKLTAFSYCNIHGLWMGEATLSLE

The query sequence (length=124) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4bfk:B 125 124 0.9919 0.9840 0.9919 1.03e-88 4bff:A, 4bff:B, 4bff:C, 4bff:D, 4bff:E, 4bff:F, 4bff:G, 4bff:H, 4bff:I, 4bff:J, 4bff:K, 4bff:L, 4bff:M, 4bff:N, 4bff:O, 4bff:P, 4bfj:A, 4bfj:B, 4bfk:A, 4bfk:C, 4bfk:D, 4bgl:A, 4bgl:B, 4bgl:C, 4bgl:D, 4c4b:A, 4c4b:B, 4c4u:A, 4c4u:B, 4c4u:C, 4c4u:D, 4c4u:E, 4c4u:F, 4c4u:G, 4c4u:H, 4c4u:I, 4c4u:J, 4c4u:K, 4c4u:L, 4c4u:M, 4c4u:N, 4c4u:O, 4c4u:P
2 1do6:A 124 121 0.6613 0.6613 0.6777 1.39e-55 1do6:B, 1dqi:A, 1dqi:B, 1dqi:C, 1dqi:D, 1dqk:A, 1dqk:B, 1dqk:C, 1dqk:D
3 2hvb:B 115 121 0.5968 0.6435 0.6116 5.04e-45 2hvb:A, 2hvb:C, 2hvb:D
4 2amu:A 132 126 0.5403 0.5076 0.5317 1.14e-44 3qzb:A
5 6gq8:A 109 110 0.4032 0.4587 0.4545 4.61e-27 6gq8:B, 6gq8:C, 6gq8:D
6 4brj:A 124 120 0.3952 0.3952 0.4083 3.90e-19 4bk8:A, 4brv:A, 4brv:B, 4brv:C, 4brv:D
7 2ji2:A 126 115 0.3387 0.3333 0.3652 9.21e-10 2ji1:A, 2ji1:B, 2ji1:C, 2ji1:D, 2ji2:B, 2ji2:C, 2ji2:D, 2ji3:A, 2ji3:B, 2ji3:C, 2ji3:D, 1vzg:A, 1vzg:B, 1vzh:A, 1vzh:B, 1vzi:A, 1vzi:B
8 1y07:C 124 109 0.3145 0.3145 0.3578 4.52e-09 1y07:A, 1y07:B, 1y07:D
9 1dfx:A 125 114 0.3065 0.3040 0.3333 4.58e-08
10 4d7p:A 96 107 0.2581 0.3333 0.2991 1.57e-04
11 7qq6:B 275 69 0.1371 0.0618 0.2464 3.7 7qq6:A, 7qq6:C, 7qq6:D, 7qwk:B, 7qwk:H, 7qwk:D, 7qwk:G
12 5dds:A 514 61 0.1371 0.0331 0.2787 5.8 5dds:B, 5dds:C, 5dds:D, 5ddu:A, 5ddu:B, 5ddu:C, 5ddu:D, 5ddw:A, 5ddw:B, 5ddw:C, 5ddw:D, 6jc7:A, 6jc7:B, 6jc7:C, 6jc7:D, 6jc8:A, 6jc8:B, 6jc8:C, 6jc8:D, 6jc9:A, 6jc9:B, 6jc9:C, 6jc9:D, 8jt3:A, 8jt3:B, 8jt3:C, 8jt3:D
13 8pe1:B 451 39 0.1048 0.0288 0.3333 7.9 8pe1:A, 8pe2:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218