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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ELEELQQNIKLELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVLRLEPLGVCSKDVWEFLELQI
EEIYPEEEEILKKALRDLKRGKKLKPEIKGKLSRLRLFPLSAEKVYTFAKVDAIIEEENGEFFIYLYEDFIDIDLNEEYW
ELYKKSRNLQKELKEAFERYESIRKVLDIRRRNLRKVLEKIVERQKDFLTGKGSLKPLTLREVSSEIGIHESTLSRIVNS
KYVKTPVGTYSLRTFFVRESAEGLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYREMLGIPSSR
ERR

The query sequence (length=323) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ui5:V 323 323 1.0000 1.0000 1.0000 0.0 2o8k:A, 2o9l:A, 5ui5:I
2 7qv9:M 417 343 0.3065 0.2374 0.2886 1.74e-37 8f1i:M, 8f1j:M, 8f1k:M, 7qwp:M, 7qxi:M, 8re4:M, 8rea:M
3 8reb:M 350 334 0.2879 0.2657 0.2784 2.14e-31 8rec:M, 8red:M, 8ree:M
4 5nss:M 388 142 0.1610 0.1340 0.3662 1.60e-20 6gfw:M, 6gh5:M, 5nsr:M
5 5nss:M 388 73 0.0588 0.0490 0.2603 6.91e-04 6gfw:M, 6gh5:M, 5nsr:M
6 6gh6:M 315 133 0.1517 0.1556 0.3684 9.84e-20
7 6gh6:M 315 73 0.0588 0.0603 0.2603 5.45e-04
8 2f48:B 552 90 0.0867 0.0507 0.3111 1.8 2f48:A, 1kzh:A
9 1kzh:B 530 83 0.0805 0.0491 0.3133 2.2
10 7fe4:A 659 93 0.0805 0.0395 0.2796 3.1 7fe4:B, 7fe4:C, 8iuc:C, 8iuc:A, 8iuc:B
11 6skg:Af 242 35 0.0464 0.0620 0.4286 5.1 6skf:Af, 6th6:Af
12 7lq4:A 192 48 0.0495 0.0833 0.3333 6.4
13 4o1w:A 79 49 0.0495 0.2025 0.3265 6.5 4o1w:D, 4o1w:B, 4o1w:C, 4o1w:E, 4o1w:F
14 2j9d:B 103 90 0.0805 0.2524 0.2889 6.5 2j9d:H, 2j9d:K
15 7ukn:A 1059 120 0.0960 0.0293 0.2583 6.9
16 5mpf:B 202 26 0.0402 0.0644 0.5000 9.1 5mpf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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