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BioLiP
>protein
ELEAMSRYTSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLFMGFGVLFLLLWVGIYV

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6s7o:C 78 78 1.0000 1.0000 1.0000 1.31e-51 6s7t:C
2 6wkd:A 280 23 0.1026 0.0286 0.3478 4.9 6wkf:A, 6wkh:A
3 6fmr:A 475 47 0.2436 0.0400 0.4043 5.3 4d2b:A, 4d2d:A, 5d58:A, 5d59:A, 6eia:A, 6fmy:A, 6ghj:A, 5oxl:A, 5oxm:A, 5oxn:A, 5oxo:A, 5oxq:A, 4xnj:A, 6yof:A, 6yog:A
4 8i9z:CY 382 28 0.1282 0.0262 0.3571 7.5
5 8i9y:CY 420 28 0.1282 0.0238 0.3571 8.6 8i9x:CY, 8ia0:CY
6 4qsh:C 1081 19 0.1410 0.0102 0.5789 9.5 4qsh:A, 4qsh:D, 4qsh:B, 4qsk:A, 4qsk:B
7 6s32:D 352 39 0.2051 0.0455 0.4103 9.9 6s32:A, 6s32:B, 6s32:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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