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BioLiP
>protein
EKRRDNRGRILKTGESQRKDGRYLYKYIDSFGEPQFVYSWKLVATDRVPAGKRDAISLREKIAELQKDI

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1b69:A 69 69 1.0000 1.0000 1.0000 1.04e-45 1tn9:A
2 1v72:A 345 41 0.2029 0.0406 0.3415 0.81
3 8ayh:B 951 43 0.2029 0.0147 0.3256 0.98 3frp:A, 3hrz:A, 3hs0:A, 3hs0:F
4 8bdc:A 963 28 0.1594 0.0114 0.3929 2.0 8bdc:B, 8bdc:C, 8bdc:D
5 2bv8:A 162 19 0.1449 0.0617 0.5263 2.5 2bv8:K
6 6oiu:C 900 41 0.1594 0.0122 0.2683 2.7 6oiu:A, 6oiu:B, 6oiu:D
7 7ezx:M1 162 19 0.1449 0.0617 0.5263 4.5 7ezx:I1, 7ezx:E1, 7ezx:E7, 7ezx:K7, 7ezx:I7, 7ezx:G7, 7ezx:C7, 7ezx:M9, 7ezx:K9, 7ezx:I9, 7ezx:G9, 7ezx:E9, 7ezx:C9, 7ezx:MF, 7ezx:KF, 7ezx:IF, 7ezx:GF, 7ezx:EF, 7ezx:CF, 7ezx:MI, 7ezx:KI, 7ezx:II, 7ezx:GI, 7ezx:EI, 7ezx:CI, 7ezx:MK, 7ezx:EK, 6kgx:M2, 6kgx:G2, 6kgx:I2, 6kgx:E2, 6kgx:M6, 6kgx:G6, 6kgx:I6, 6kgx:K6, 6kgx:E6, 6kgx:C6, 6kgx:G7, 6kgx:E7, 6kgx:MB, 6kgx:GB, 6kgx:IB, 6kgx:KB, 6kgx:EB, 6kgx:CB, 6kgx:IF, 6kgx:GF, 6kgx:EF, 6kgx:MF, 6kgx:MI, 6kgx:GI, 6kgx:II, 6kgx:EI, 7y4l:MB, 7y4l:GB, 7y4l:IB, 7y4l:EB, 7y4l:IC, 7y4l:GC, 7y4l:EC, 7y4l:MC, 7y4l:MD, 7y4l:GD, 7y4l:ID, 7y4l:KD, 7y4l:ED, 7y4l:CD, 7y4l:ME, 7y4l:IE, 7y4l:GE, 7y4l:KE, 7y4l:EE, 7y4l:CE, 7y4l:E2, 7y4l:M2, 7y4l:I2, 7y4l:G2, 7y4l:G6, 7y4l:I6, 7y4l:E6, 7y4l:M6, 7y4l:KC, 7y5e:ME, 7y5e:GE, 7y5e:IE, 7y5e:KE, 7y5e:EE, 7y5e:CE, 7y5e:MG, 7y5e:GG, 7y5e:IG, 7y5e:KG, 7y5e:EG, 7y5e:CG, 7y5e:IH, 7y5e:GH, 7y5e:EH, 7y5e:MH, 7y5e:MO, 7y5e:GO, 7y5e:IO, 7y5e:EO, 7y5e:E1, 7y5e:M1, 7y5e:I1, 7y5e:G1, 7y5e:G4, 7y5e:I4, 7y5e:E4, 7y5e:M4, 7y7a:M1, 7y7a:G1, 7y7a:I1, 7y7a:K1, 7y7a:E1, 7y7a:C1, 7y7a:M4, 7y7a:G4, 7y7a:I4, 7y7a:E4, 7y7a:M8, 7y7a:G8, 7y7a:I8, 7y7a:K8, 7y7a:E8, 7y7a:C8, 7y7a:II, 7y7a:GI, 7y7a:EI, 7y7a:MI, 7y7a:MK, 7y7a:GK, 7y7a:IK, 7y7a:KK, 7y7a:EK, 7y7a:CK, 7y7a:IP, 7y7a:GP, 7y7a:EP, 7y7a:MP, 7y7a:MR, 7y7a:GR, 7y7a:IR, 7y7a:KR, 7y7a:ER, 7y7a:CR, 7y7a:CS, 7y7a:IS, 7y7a:GS, 7y7a:ES, 7y7a:MS, 7y7a:Me, 7y7a:Ge, 7y7a:Ie, 7y7a:Ee, 7y7a:Mj, 7y7a:Gj, 7y7a:Ij, 7y7a:Ej, 7y7a:Cl, 7y7a:Il, 7y7a:Gl, 7y7a:El, 7y7a:Ml, 7y7a:Mn, 7y7a:Gn, 7y7a:In, 7y7a:En
8 3kvs:A 161 19 0.1449 0.0621 0.5263 4.6 3brp:A
9 7usw:A 608 43 0.1884 0.0214 0.3023 4.9 7usw:B, 7usx:A, 7usx:B, 7usy:A, 7usy:B
10 6nr2:A 859 28 0.1594 0.0128 0.3929 7.8 6nr2:B, 6nr2:C, 6nr2:D, 6nr3:A, 6nr3:B, 6nr3:C, 6nr3:D, 6o6a:A, 6o6a:B, 6o6a:C, 6o6a:D, 6o6r:A, 6o6r:B, 6o6r:C, 6o6r:D
11 4qpe:A 867 27 0.1594 0.0127 0.4074 8.9 5dyf:A, 2gtq:A, 4pu2:A, 4pvb:A, 4pw4:A, 4qhp:A, 4qir:A, 4qme:A, 4quo:A
12 5fob:A 642 54 0.2464 0.0265 0.3148 9.6 7bag:A, 3g6j:A, 3g6j:C, 2ice:A, 2ice:D, 2icf:A, 5o32:A, 5o32:E, 2qki:A, 2qki:D, 2wii:A, 2xwb:A, 2xwb:C
13 3st7:A 369 27 0.1159 0.0217 0.2963 9.9 2zkl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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