Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EKRINKIRKKLSADNATKPVSRSGPMKTLLVRVMTDDLKKRLEKRRKKPEVMPQVISNNAANNLRMLLDDYTKMKEAILQ
VYWQEFKDDHVGLMCKFAQPASAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
KFGQRALDFYSIHVTKESTHPVKPLAQIAGNRYASGPVGKALSDACMGTIASFLSKYQDIIIEHQKVVKGNQKRLESLRE
LAGKENLEYPSVTLPPQPHTKEGVDAYNEVIARVRMWVNLNLWQKLKLSRDDAKPLLRLKGFPSFPVVERRENEVDWWNT
INEVKKLIDAKRDMGRVFWSGVTAEKRNTILEGYNYLPNENDHKKRENPKKPAKRQFGDLLLYLEKKYWGKVFDEAWERI
DKKIAGLTSHIEREEARNAEDAQSKAVLTDWLRAKASFVLERLKEMDEKEFYACEIQLQKWYGDLRGNPFAVEAENRVVD
ISGFSIGSDGHSIQYRNLLAWKYLENGKREFYLLMNYGKKGRIRFTDGTDIKKSGKWQGLLYGGGKAKVIDLTFDPDDEQ
LIILPLAFGTRQGREFIWNDLLSLETGLIKLANGRVIEKTIYNKKIGRDEPALFVALTFERREVVDPSNIKPVNLIGVAR
GENIPAVIALTDPEGCPLRIGEGYKEKQRAIQAAKEVEQRRAGGYSRKFASKSRNLADDMVRNSARDLFYHAVTHDAVLV
FANLSRGFGRQGKRTFMTERQYTKMEDWLTAKLAYEGLTSKTYLSKTLAQYTSKTCSNCGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARFSHRPVQEQFVCLDCGHEVHAAEQAALNIARSWLF
LNSNSTEFKSYKSGKQPFVGAWQAFYKRRLKEVWK

The query sequence (length=915) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ny2:Y 915 915 1.0000 1.0000 1.0000 0.0 6ny1:Y, 6ny3:Y
2 7way:A 960 973 0.6044 0.5760 0.5683 0.0 7waz:A, 7wb1:A
3 7wb0:A 797 500 0.3027 0.3476 0.5540 1.03e-171
4 7wb0:A 797 324 0.1945 0.2233 0.5494 5.41e-116
5 8hr5:A 466 200 0.0546 0.1073 0.2500 0.46
6 8hr5:A 466 45 0.0197 0.0386 0.4000 1.3
7 8kgf:A 1261 144 0.0437 0.0317 0.2778 0.93
8 8on7:A 525 24 0.0142 0.0248 0.5417 2.8 8on7:B, 8on7:C, 8on9:A, 8on9:B, 8on9:C, 8ona:A, 8ona:B, 8ona:C
9 5zcl:A 312 60 0.0164 0.0481 0.2500 5.8 5gwo:A, 5gwo:B, 5gwp:A, 5gwp:B, 5zcg:A, 5zcg:B, 5zch:A, 5zch:B, 5zcl:B, 5zcu:A, 5zcu:B
10 4irn:A 378 44 0.0120 0.0291 0.2500 6.6 4irn:B, 4irn:C, 4irn:D, 4irn:E, 4irn:F, 4irn:G, 4irn:H
11 6rj9:C 836 84 0.0273 0.0299 0.2976 7.1 6rjd:C
12 3s6l:D 158 62 0.0219 0.1266 0.3226 7.1 3s6l:A, 3s6l:B, 3s6l:C, 3s6l:E
13 7eih:A 588 33 0.0142 0.0221 0.3939 8.8 7eih:B, 7eii:A, 7eii:B, 7eij:A, 7eij:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218