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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EKQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVD
LRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPP
EQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHS
DAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV

The query sequence (length=296) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ome:A 298 296 1.0000 0.9933 1.0000 0.0 2hw1:A, 8ome:D, 8ome:B, 8ome:C
2 8ug1:B 305 294 0.8986 0.8721 0.9048 0.0 9fhd:A, 9fhd:B, 9fhe:A, 9fhe:B, 3nbv:A, 3nbv:B, 3nbw:A, 3nbw:B, 3nc2:A, 3nc2:B, 3nc9:A, 3nc9:B, 3nca:A, 8omf:A, 8omf:B, 8omj:A, 8omj:B, 8omk:A, 8omk:B, 3q92:A, 3q92:B, 3qa2:A, 3qa2:B, 3qai:A, 3qai:B, 3ro4:A, 8ug1:A, 8ug3:A, 8ug3:B, 6ul7:A, 6w0n:A, 6w0n:B, 6w0w:A, 6w0w:B, 6w0x:A, 6w0x:B, 6w0y:A, 6w0y:B, 6w0z:A, 6w0z:B, 5wbm:A, 5wbm:B, 5wbo:A, 5wbo:B, 5wbp:A, 5wbq:A, 5wbq:B, 5wbr:A, 5wbr:B, 5wbz:A, 5wbz:B
3 8omd:A 296 296 0.8041 0.8041 0.8041 0.0 8omd:C, 8omd:B, 8omd:D, 6p2d:A
4 7ag6:A 302 297 0.2500 0.2450 0.2492 1.05e-12 7ag6:B, 7agh:C, 7agh:D, 7agh:A, 7agh:B, 7agk:A, 7agk:B, 7agk:C
5 4k8p:A 332 312 0.2770 0.2470 0.2628 1.21e-12 4e3a:A, 4e3a:B, 4jks:A, 4jks:B, 4jku:A, 4jku:B, 4k8c:A, 4k8c:B, 4k8k:A, 4k8k:B, 4k8p:B, 4k8t:A, 4k8t:B, 4k93:A, 4k93:B, 4k9c:A, 4k9c:B, 4k9i:A, 4k9i:B, 4kad:A, 4kad:B, 4kah:A, 4kah:B, 4kal:A, 4kal:B, 4kan:A, 4kan:B, 4kbe:A, 4kbe:B, 4lbg:A, 4lbg:B, 4lbx:A, 4lbx:B, 4lc4:A, 4lc4:B, 4lca:A, 4lca:B
6 3ubo:A 338 317 0.2703 0.2367 0.2524 7.95e-12 3ubo:B
7 6a8a:A 327 294 0.2399 0.2171 0.2415 1.27e-09 6a8a:B, 6a8b:A, 6a8b:B, 6a8c:A, 6a8c:B, 5zwy:A, 5zwy:B
8 3in1:A 312 300 0.2331 0.2212 0.2300 1.00e-08 3in1:B
9 6ils:B 313 299 0.2331 0.2204 0.2308 1.06e-07 6ils:A, 6ilt:A, 6ilt:B
10 4wjm:A 312 289 0.2331 0.2212 0.2388 1.57e-07
11 8cqx:A 300 295 0.2466 0.2433 0.2475 3.44e-07 8cqx:B, 8cqx:C, 8cqx:D, 6znx:A, 6znx:B, 6znx:D
12 1tz3:A 299 307 0.2601 0.2575 0.2508 1.14e-05 1tz6:A, 1tz6:B
13 2c49:A 299 298 0.1993 0.1973 0.1980 3.53e-05 2c49:B
14 1v1a:A 301 272 0.2297 0.2259 0.2500 5.94e-05 1v1a:B, 1v1b:A, 1v1b:D, 1v1b:B, 1v1b:C
15 3ih0:A 304 287 0.2230 0.2171 0.2300 0.001 3gbu:A, 3gbu:B, 3gbu:C, 3gbu:D
16 5c41:A 317 283 0.1892 0.1767 0.1979 0.002 5byf:A, 5byf:B, 5c3y:A, 5c3y:B, 5c3y:C, 5c3y:D, 5c3y:E, 5c3y:F, 5c3y:G, 5c3y:H, 5c3y:I, 5c3y:J, 5c3y:K, 5c3y:L, 5c3z:A, 5c3z:B, 5c40:A, 5c40:B, 5c41:B, 5c41:C, 5c41:D, 2fv7:A, 2fv7:B, 6wjz:A, 6wjz:B, 6wk0:A, 6wk0:B, 6wk0:C, 6wk0:D
17 6znx:C 265 45 0.0642 0.0717 0.4222 0.006
18 5ygg:A 310 244 0.1791 0.1710 0.2172 0.007 5eyn:A, 5f0z:A, 5f11:A
19 2a9y:A 351 41 0.0541 0.0456 0.3902 0.016 2a9z:A, 2aa0:A, 2ab8:A, 2abs:A, 1dgm:A, 1lii:A, 1lij:A, 1lik:A
20 6c9r:A 337 58 0.0608 0.0534 0.3103 0.034 6c67:A, 6c67:B, 6c9n:A, 6c9n:B, 6c9p:A, 6c9p:B, 6c9q:A, 6c9r:B, 6c9s:A, 6c9s:B, 6c9v:A, 6c9v:B, 4o1g:A, 2pkk:A, 2pkm:A, 2pkn:A, 4pvv:A, 4ube:A
21 4i3x:A 476 291 0.2432 0.1513 0.2474 0.054 4i3t:A, 4i3t:B, 4i3t:C, 4i3t:D, 4i3t:E, 4i3t:F, 4i3t:G, 4i3t:H, 4i3u:A, 4i3u:B, 4i3u:C, 4i3u:D, 4i3u:E, 4i3u:F, 4i3u:G, 4i3u:H, 4i3v:A, 4i3v:B, 4i3v:C, 4i3v:D, 4i3v:E, 4i3v:F, 4i3v:G, 4i3v:H, 4i3w:A, 4i3w:B, 4i3w:C, 4i3w:D, 4i3w:E, 4i3w:F, 4i3w:G, 4i3w:H, 4i3x:B, 4i3x:C, 4i3x:D, 4i3x:E, 4i3x:F, 4i3x:G, 4i3x:H
22 3n1c:A 309 56 0.0676 0.0647 0.3571 0.057 3cqd:A, 3cqd:B, 3n1c:D, 3n1c:B, 3n1c:C, 3umo:A, 3umo:B, 3ump:A, 3ump:B, 3uqd:A, 3uqd:C, 3uqd:B, 3uqd:D, 3uqe:A, 3uqe:B
23 2afb:A 329 284 0.2128 0.1915 0.2218 0.10
24 3kd6:A 300 133 0.1182 0.1167 0.2632 0.21 3kd6:B
25 3loo:B 341 127 0.1182 0.1026 0.2756 0.22 3loo:A, 3loo:C
26 6xk2:A 320 42 0.0642 0.0594 0.4524 0.31 6xk2:B, 6xk2:C, 6xk2:D
27 6wb7:A 296 44 0.0507 0.0507 0.3409 0.38 6wb7:B, 6wb7:C, 6wb7:D
28 4xck:A 306 32 0.0405 0.0392 0.3750 0.80 4xck:B, 4xck:C, 4xck:D, 4xda:A, 4xda:B, 4xda:C, 4xda:D
29 3ktn:A 340 36 0.0405 0.0353 0.3333 1.4
30 3lki:B 322 111 0.0878 0.0807 0.2342 1.5
31 2i5b:A 269 54 0.0676 0.0743 0.3704 1.7 2i5b:C, 2i5b:D, 2i5b:B, 2i5b:E
32 1gqt:B 307 28 0.0405 0.0391 0.4286 3.2 1gqt:A, 1gqt:C, 1gqt:D, 1rk2:A, 1rk2:B, 1rk2:C, 1rk2:D, 1rkd:A, 1rks:A
33 3kao:A 325 105 0.0912 0.0831 0.2571 3.6
34 3uq6:A 345 144 0.1182 0.1014 0.2431 4.0 4dc3:A, 4dc3:B, 3uq6:B, 3uq9:A, 3uq9:B, 3vaq:A, 3vaq:B, 3vas:A, 3vas:B
35 3b1n:B 320 45 0.0439 0.0406 0.2889 9.8 3b1n:A, 3b1p:A, 3b1q:A, 3b1q:B, 3b1q:C, 3b1q:D, 3b1q:E, 3b1q:F, 3b1r:A, 3b1r:B, 3b1r:C, 3b1r:D, 3b1r:E, 3b1r:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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