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BioLiP
>protein
EKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVV
VQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5fw5:A 139 135 1.0000 0.9137 0.9407 1.65e-91 4fcm:A, 4fcm:B, 7suo:A, 7suo:B, 6ta7:D, 6ta7:E, 6ta7:F, 8th1:A, 8th1:B, 8th1:C, 8th1:D, 8th5:A, 8th5:C, 8th5:F, 8th5:B, 8th5:E, 8th5:D, 8th6:D, 8th6:C, 8th6:B, 8th6:A, 8th7:A, 8th7:B, 8v1l:A, 8v1l:B, 8v1l:C, 8v1l:D, 8v1l:E, 8v1l:F, 7xhf:A, 7xhf:B, 7xhg:B, 7xhg:C, 7xhg:D
2 8th5:I 119 127 0.9134 0.9748 0.9134 2.44e-76
3 5drv:A 131 127 0.8110 0.7863 0.8110 3.54e-74
4 3ujm:A 117 119 0.5906 0.6410 0.6303 2.22e-48 3ujm:B
5 1gyb:B 122 116 0.2913 0.3033 0.3190 5.89e-09 1gyb:D, 1gyb:C
6 2qiy:A 134 127 0.2441 0.2313 0.2441 5.90e-04 2qiy:B
7 2cc0:A 192 79 0.1732 0.1146 0.2785 0.035 2cc0:B
8 3u43:B 132 80 0.1417 0.1364 0.2250 0.50
9 1v9a:B 228 59 0.1496 0.0833 0.3220 0.79 1v9a:A
10 8ro2:L2 369 53 0.1260 0.0434 0.3019 0.84 6id0:U, 6id1:U
11 6uel:A 1333 55 0.1654 0.0158 0.3818 2.1 6uel:B
12 7aqq:z 233 93 0.1969 0.1073 0.2688 2.2 7a23:q, 7a23:p, 7a24:q, 7a24:p, 7ar7:z, 7ar8:z, 7arb:z, 8bef:z, 8bpx:z, 8bq5:z, 8bq6:z
13 6v76:D 431 62 0.1339 0.0394 0.2742 3.6 1aqf:E, 4fxj:B, 6gg3:I, 6gg3:J, 6gg4:C, 6gg4:D, 6gg5:C, 6gg5:D, 4qg6:A, 4qg6:C, 7r6y:D, 4rpp:A, 4rpp:B, 4rpp:C, 4rpp:D, 6tth:A, 6tth:B, 6tth:C, 6tth:D, 6tti:A, 6tti:B, 6tti:C, 6tti:D, 6v74:D, 6v75:D, 6wp3:B, 6wp5:D
14 6nu1:B 452 62 0.1339 0.0376 0.2742 3.6 7r6y:C
15 6gg3:E 481 62 0.1339 0.0353 0.2742 3.6 3h6o:C, 8hmu:B, 6nu1:A
16 6v74:C 499 62 0.1339 0.0341 0.2742 3.6 3h6o:A, 8hmq:A, 8hmq:C, 8hmq:D, 8hms:D, 3me3:B
17 6gg3:F 524 62 0.1339 0.0324 0.2742 3.7 1a49:A, 1a49:B, 1a49:C, 1a49:D, 1a49:E, 1a49:F, 1a49:G, 1a49:H, 1a5u:A, 1a5u:B, 1a5u:C, 1a5u:D, 1a5u:E, 1a5u:F, 1a5u:G, 1a5u:H, 1aqf:A, 1aqf:B, 1aqf:C, 1aqf:D, 1aqf:F, 1aqf:G, 1aqf:H, 4b2d:A, 4b2d:B, 4b2d:C, 4b2d:D, 6b6u:A, 6b6u:B, 3bjf:A, 3bjf:B, 3bjf:C, 3bjf:D, 3bjt:A, 3bjt:B, 3bjt:C, 3bjt:D, 1f3w:A, 1f3w:B, 1f3w:C, 1f3w:D, 1f3w:E, 1f3w:F, 1f3w:G, 1f3w:H, 1f3x:A, 1f3x:B, 1f3x:C, 1f3x:D, 1f3x:E, 1f3x:F, 1f3x:G, 1f3x:H, 8f5t:A, 8f5t:B, 8f5t:C, 8f5t:D, 8f5t:E, 8f5t:F, 8f5t:G, 8f5t:H, 8f5u:A, 8f5u:B, 8f5u:C, 8f5u:D, 8f6m:A, 8f6m:B, 8f6m:C, 8f6m:D, 8f6m:E, 8f6m:F, 8f6m:G, 8f6m:H, 4fxf:A, 4fxf:D, 4fxf:C, 4fxf:B, 4fxj:A, 4fxj:C, 4fxj:D, 4g1n:A, 4g1n:B, 4g1n:C, 4g1n:D, 8g2e:A, 2g50:A, 2g50:B, 2g50:C, 2g50:D, 2g50:E, 2g50:F, 2g50:G, 2g50:H, 6gg3:A, 6gg3:C, 6gg3:D, 6gg3:G, 6gg3:H, 6gg3:K, 6gg3:L, 6gg4:A, 6gg4:B, 6gg5:A, 6gg5:B, 6gg6:A, 6gg6:B, 6gg6:C, 6gg6:D, 6gg6:E, 6gg6:F, 6gg6:G, 6gg6:H, 3gqy:A, 3gqy:B, 3gqy:C, 3gqy:D, 3gr4:A, 3gr4:B, 3gr4:C, 3gr4:D, 3h6o:B, 3h6o:D, 8hmq:B, 8hmr:A, 8hmr:B, 8hmr:C, 8hmr:D, 8hms:A, 8hms:B, 8hms:C, 8hmu:A, 8hmu:C, 8hmu:D, 6jfb:A, 6jfb:B, 6jfb:C, 6jfb:D, 4jpg:A, 4jpg:B, 4jpg:C, 4jpg:D, 7l21:A, 7l21:B, 7l21:C, 7l21:D, 3me3:A, 3me3:C, 3me3:D, 3n25:A, 3n25:B, 3n25:C, 3n25:D, 3n25:E, 3n25:F, 3n25:G, 3n25:H, 6nu1:C, 6nu1:D, 6nu5:A, 6nu5:B, 6nub:A, 6nub:B, 1pkn:A, 4qg6:B, 4qg6:D, 4qg8:B, 4qg8:C, 4qg9:A, 4qg9:B, 7r6y:A, 7r6y:B, 3srd:A, 3srd:B, 3srd:C, 3srd:D, 3srf:C, 3srf:A, 3srf:B, 3srf:D, 3srf:E, 3srf:F, 3srf:G, 3srf:H, 1t5a:A, 1t5a:B, 1t5a:C, 1t5a:D, 6ttf:A, 6ttf:B, 6ttf:C, 6ttf:D, 6ttq:A, 6ttq:B, 6ttq:C, 6ttq:D, 3u2z:A, 3u2z:B, 3u2z:C, 3u2z:D, 6v74:A, 6v74:B, 6v75:C, 6v75:A, 6v75:B, 6v76:C, 6v76:A, 6v76:B, 4wj8:A, 4wj8:B, 4wj8:C, 4wj8:D, 6wp3:A, 6wp4:A, 6wp4:B, 6wp4:C, 6wp4:D, 6wp5:B, 6wp5:A, 6wp5:C, 6wp6:C, 6wp6:A, 5x0i:A, 5x0i:B, 5x0i:C, 5x0i:D, 5x1v:A, 5x1v:B, 5x1v:C, 5x1v:D, 5x1w:A, 5x1w:B, 5x1w:C, 5x1w:D, 4yj5:A, 4yj5:B, 4yj5:C, 4yj5:D
18 8e7f:A 614 34 0.1024 0.0212 0.3824 5.6
19 7w6d:A 104 27 0.0709 0.0865 0.3333 7.9 5b09:A, 7w6d:B, 7w6e:A, 7w6e:B, 7w6f:A, 7w6f:B
20 7mgq:A 602 44 0.0945 0.0199 0.2727 8.2 7mgq:B, 7mgq:C, 7mgq:D
21 8hra:C 852 30 0.0945 0.0141 0.4000 8.7 8hr8:A, 8hr8:C, 8hr8:F, 8hr8:H, 8hr9:A, 8hr9:C, 8hr9:F, 8hr9:H, 8hr9:I, 8hr9:J, 8hr9:M, 8hr9:O, 8hra:D, 8hra:E, 8hra:H, 8hra:A, 8hra:B, 8hra:G, 8hrb:D, 8hrb:E, 8hrb:C, 8hrb:H, 8hrb:A, 8hrb:B, 8hrb:M, 8hrb:P, 8hrb:L, 8hrb:R, 8hrb:F, 8hrb:K, 8hrb:Q, 8hrb:G
22 8hr8:G 830 30 0.0945 0.0145 0.4000 8.9 8hr9:G, 8hr9:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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