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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EKPGETKEVHPQLTTFRCTKRGGCKPATNFIVLDSLSHPIHRAEGLGPGGCGDWGNPPPKDVCPDVESCAKNCIMEGIPD
YSQYGVTTNGTSLRLQHILPDGRVPSPRVYLLDKTKRRYEMLHLTGFEFTFDVDATKLPCGMNSALYLSEMHPTGAKSKY
NPGGAYYGTGYCDAQCFVTPFINGLGNIEGKGSCCNSMDIWEANSRASHVAPHTCNKKGLYLCEGEECAFEGVCDKNGCG
WNNYRVNVTDYYGRGEEFKVNTLKPFTVVTQFLANRRGKLEKIHRFYVQDGKVIESFYTNKEGVPYTNMIDDEFCEATGS
RKYMELGATQGMGEALTRGMVLAMSIWWDQGGNMEWLDHGEAGPCAKGEGAPSNIVQVEPFPEVTYTNLRWGEIGSTY

The query sequence (length=398) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6yoz:AAA 400 398 0.9950 0.9900 0.9950 0.0 1ojj:A, 1ojj:B, 1ojk:A, 1ojk:B, 6yoz:BBB
2 4ovw:A 400 401 0.5854 0.5825 0.5810 2.80e-178 1ovw:A, 1ovw:B, 1ovw:C, 1ovw:D, 2ovw:A, 2ovw:B, 2ovw:C, 2ovw:D, 4ovw:B
3 1h46:X 431 430 0.4548 0.4200 0.4209 1.70e-98 1z3t:A, 1z3v:A, 1z3w:A
4 2xsp:A 440 439 0.4296 0.3886 0.3895 6.31e-93 2yg1:A, 2yg1:B
5 4v1z:A 440 444 0.4347 0.3932 0.3896 3.52e-87 4v20:A
6 3pfx:A 436 437 0.4196 0.3830 0.3822 6.53e-87 3pfz:A, 3pl3:A
7 5w11:B 440 435 0.4271 0.3864 0.3908 7.64e-85 5w11:A
8 4c4c:A 434 433 0.4070 0.3733 0.3741 9.69e-84 4c4d:A, 1cel:A, 1cel:B, 2cel:A, 2cel:B, 3cel:A, 4cel:A, 4cel:B, 5cel:A, 6cel:A, 7cel:A, 4d5i:A, 4d5j:A, 4d5o:A, 4d5p:A, 4d5q:A, 4d5v:A, 1dy4:A, 1egn:A, 6grn:A, 7nyt:A, 7oc8:A, 1q2b:A, 1q2e:A, 1q2e:B, 6rwf:A, 4uwt:A, 4v0z:A, 2v3i:A, 2v3r:A
9 5o59:A 430 434 0.4045 0.3744 0.3710 3.43e-80 5o59:B
10 4xeb:A 430 435 0.3920 0.3628 0.3586 7.27e-76
11 4zzu:A 438 436 0.3970 0.3607 0.3624 1.30e-75 4zzt:A, 4zzv:A, 4zzw:A
12 2rfy:A 430 437 0.3819 0.3535 0.3478 4.67e-73 2rfy:B, 2rfy:C, 2rfy:D, 2rfz:A, 2rfz:D, 2rfz:B, 2rfz:C, 2rg0:A, 2rg0:B, 2rg0:C, 2rg0:D
13 4hap:A 431 438 0.3945 0.3643 0.3584 9.03e-70 4hap:B, 4haq:A, 4haq:B, 4ipm:A
14 1mnm:C 77 43 0.0352 0.1818 0.3256 0.18 1mnm:D
15 7mq8:SI 844 55 0.0452 0.0213 0.3273 5.2 7mq9:SI
16 7mqa:SI 803 55 0.0452 0.0224 0.3273 5.3
17 7qbk:A 284 82 0.0553 0.0775 0.2683 5.7
18 6c66:A 511 95 0.0578 0.0450 0.2421 6.0 5u07:C, 5u0a:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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