Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITN
QRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELL
FGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISG
IAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMK
LINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGI
RLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNY
RYAGWKKAVKRAMAWEEH

The query sequence (length=498) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1bu6:Y 499 498 0.9980 0.9960 0.9980 0.0 1bo5:O, 1bo5:Z, 1bot:O, 1bot:Z, 1bu6:O, 1bu6:Z, 1bu6:X, 1bwf:Y, 1bwf:O, 3ezw:A, 3ezw:B, 3ezw:E, 3ezw:G, 3ezw:C, 3ezw:D, 3ezw:F, 3ezw:H, 1gla:G, 1glb:G, 1glc:G, 1gld:G, 1gle:G, 1glf:O, 1glf:X, 1glf:Y, 1glf:Z, 1glj:Y, 1glj:O, 1gll:Y, 1gll:O
2 3ge1:A 499 489 0.6104 0.6092 0.6217 0.0 3ge1:B, 3ge1:C, 3ge1:D
3 6ude:B 495 496 0.6044 0.6081 0.6069 0.0 6ude:A, 6ude:C, 6ude:D
4 3h3n:X 501 489 0.5622 0.5589 0.5726 0.0 3d7e:O, 3d7e:X, 3flc:O, 3flc:X, 3h3n:O, 3h3o:O, 3h3o:X, 3h3o:B, 3h3o:C, 3h45:X, 3h45:O, 3h45:C, 3h45:D, 3h46:X, 3h46:O, 1xup:O, 1xup:X
5 6k76:A 485 491 0.5663 0.5814 0.5743 0.0 6k76:B
6 5azi:A 513 507 0.4518 0.4386 0.4438 2.45e-139 5azi:B, 5azi:C, 5azi:D, 5azj:A, 5azj:B, 5azj:C, 5azj:D, 5gn5:A, 5gn5:B, 5gn5:C, 5gn5:D, 5gn6:A, 5gn6:B, 5gn6:C, 5gn6:D, 6j9q:A, 6j9q:B, 6j9q:C, 6j9q:D, 6j9v:A, 6j9v:B, 6jaf:A, 3wxj:A, 3wxj:B, 3wxj:C, 3wxj:D, 3wxk:A, 3wxk:B, 3wxk:C, 3wxk:D, 3wxl:A, 3wxl:B, 3wxl:C, 3wxl:D
7 2w41:B 507 499 0.4056 0.3984 0.4048 4.02e-122 2w40:A, 2w40:B, 2w40:C, 2w40:D, 2w41:A
8 6zq4:F 512 509 0.4297 0.4180 0.4204 9.06e-122 6zq4:A, 6zq4:B, 6zq4:C, 6zq4:D, 6zq4:E, 6zq4:G, 6zq4:H, 6zq6:A, 6zq6:B, 6zq6:C, 6zq6:D, 6zq7:A
9 3ll3:A 492 478 0.2249 0.2276 0.2343 1.39e-31 3ll3:B
10 5ya1:A 478 499 0.2590 0.2699 0.2585 5.72e-27 5ya1:B, 5ya2:A, 5ya2:B
11 2itm:A 476 487 0.2369 0.2479 0.2423 3.80e-24 2itm:B
12 3kzb:A 498 479 0.2149 0.2149 0.2234 2.74e-09 3hz6:A
13 3l0q:A 541 180 0.0904 0.0832 0.2500 5.91e-09
14 3l0q:A 541 124 0.0683 0.0628 0.2742 3.89e-08
15 3qdk:A 546 531 0.2369 0.2161 0.2222 1.96e-07
16 3i8b:A 506 424 0.2048 0.2016 0.2406 9.24e-06
17 5htv:A 424 185 0.0763 0.0896 0.2054 0.016 5htx:A
18 8fne:A 525 109 0.0582 0.0552 0.2661 0.31 8fne:B, 8fne:C, 8fne:D, 8fv5:A, 8fv5:B, 8fv5:C, 8fv5:D, 8fv5:I, 8fv5:J, 8fv5:K, 8fv5:L, 8fv5:M, 8fv5:N, 8fv5:O, 8fv5:P, 8fv5:Q, 8fv5:R, 8fv5:S, 8fv5:T
19 2cgj:A 479 87 0.0462 0.0480 0.2644 0.64 2cgl:A, 2uyt:A
20 2cgj:A 479 23 0.0241 0.0251 0.5217 1.5 2cgl:A, 2uyt:A
21 5da0:A 467 101 0.0522 0.0557 0.2574 0.79
22 7req:D 623 136 0.0723 0.0578 0.2647 2.3 1e1c:B, 1req:D, 5req:D, 6req:B
23 3b9x:C 283 101 0.0542 0.0954 0.2673 4.7
24 3mkm:A 311 101 0.0542 0.0868 0.2673 5.1 3b9x:A, 3b9x:B, 3b9x:D, 3mkm:B, 3mkm:C, 3mkm:D, 3mkn:A, 3mkn:B, 3mkn:C, 3mkn:D, 1q8f:A, 1q8f:B, 1q8f:C, 1q8f:D
25 5frp:A 677 79 0.0502 0.0369 0.3165 5.5 5frp:B, 5frs:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218