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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EKKLTQSDIRGVFLRSNLFQGSWNFERMQALGFCFSMVPAIRRLYPENNEARKQAIRRHLEFFNTQPFVAAPILGVTLAL
EEQRANGAEIDDGAINGIKVGLMGPLAGVGDPIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLVRLATRYYGVAYG
YSKGIDIVKDMGGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLVVSRITDQTGKEHVTTVQTILDQLMPGLVPLLLTF
ACMWLLRKKVNPLWIIVGFFVIGIAGYACGLLGL

The query sequence (length=274) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7dyr:Z 274 274 1.0000 1.0000 1.0000 0.0 7dyr:C, 7dyr:F, 6k1h:Z, 6k1h:F, 6k1h:C
2 8hfs:Z 303 289 0.5401 0.4884 0.5121 5.17e-100 8hfs:F, 8hfs:D
3 7xno:Z 301 299 0.5255 0.4784 0.4816 7.10e-100 7xno:E, 7xno:I, 7xtg:E, 7xtg:I, 7xtg:Z
4 7vlx:Z 298 299 0.5401 0.4966 0.4950 2.71e-97 7vlx:B, 7vlx:D, 7vly:Z, 7vly:D, 7vly:G
5 3vgk:B 312 88 0.0876 0.0769 0.2727 1.4 3vgk:A, 3vgk:C, 3vgk:D, 3vgk:E, 3vgk:F, 3vgk:G, 3vgk:H, 3vgl:A, 3vgm:A
6 5zt7:A 254 106 0.0912 0.0984 0.2358 3.3 6jv6:A, 5zt7:B, 5zta:A, 5zta:B
7 8ofv:F 175 51 0.0620 0.0971 0.3333 4.4 8ofv:L
8 3nks:A 465 121 0.0985 0.0581 0.2231 7.5 4ivm:B, 4ivo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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