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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EKKLFLKALKKKFEGEDPEEKSTNFYCFGGWEQSERKREFTEYAKKAAEKRGGIPFYNPDIGVPLGQRKLMAYRVSGTDA
YVEGDDLHFVNNAAIQQMVDDIKRTVIVGMDTAHAVLEKRLGVEVTPETINEYMEVINHALPGGAVVQEHMVEVHPGIVE
DCYAKVFTGDDNLADELDKRILIDINKEFPEEQAEQLKSYIGNRTYQVNRVPTIVVRACDGGTVSRWSAMQIGMSFISAY
KLCAGEAAIADFSFAAKHADVIEMGTIMPARRARGPNEPGGVAFGTFADIVQASRVSDDPANVSLEVIAGAAALYDQVWL
GSYMSGGVGFTQYATAAYTDDILDDFLYYGMEYVEDKFGICGSEPTMDVVRDISTEVTLYSLEQYEEYPTLLEDHFGGSQ
RAAVAAAAAGCSTAFATGNSNAGVNGWYLSQILHKEAHSRLGFYGYDLQDQCGASNSLSIRSDEGLIHELRGPNYPNYAM
NVGHQPEYAGIAQAPHAARGDAFCTNPLIKVAFADKDLSFDFTSPRKSIAKGALREFIPEGERDLIIPA

The query sequence (length=549) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5a8w:D 549 549 1.0000 1.0000 1.0000 0.0 5a8r:A, 5a8r:D, 5a8r:G, 5a8r:J, 5a8w:A, 5a8w:G, 5a8w:J
2 5n1q:A 549 549 0.7905 0.7905 0.7905 0.0 5n1q:D, 5n28:A, 5n28:D, 5n2a:A
3 1e6v:A 545 547 0.7505 0.7560 0.7532 0.0 1e6v:D
4 5a0y:A 548 548 0.7250 0.7263 0.7263 0.0 5a0y:D, 5a8k:A, 5a8k:D, 7b2h:A, 7b2h:D, 5g0r:A, 5g0r:D, 1hbm:A, 1hbm:D, 1hbn:A, 1hbn:D, 1hbo:A, 1hbo:D, 1hbu:A, 1hbu:D, 3m1v:A, 3m1v:D, 3m2r:A, 3m2r:D, 3m2u:A, 3m2u:D, 3m2v:A, 3m2v:D, 3m30:A, 3m30:D, 3m32:A, 3m32:D, 1mro:A, 1mro:D, 3pot:A, 3pot:D, 7suc:A, 7suc:a, 7sxm:A, 7sxm:D
5 1e6y:A 568 548 0.6375 0.6162 0.6387 0.0 1e6y:D, 8gf5:A, 8gf5:B
6 7nkg:D 565 563 0.6758 0.6566 0.6590 0.0 7nkg:A, 7nkg:G, 7nkg:J
7 3sqg:A 578 559 0.5355 0.5087 0.5259 0.0 3sqg:D, 3sqg:G
8 7b1s:D 593 589 0.4718 0.4368 0.4397 2.42e-166 7b1s:A, 7b2c:A, 7b2c:D
9 2q3r:A 351 95 0.0437 0.0684 0.2526 0.61 1vji:A
10 5l9c:A 304 124 0.0619 0.1118 0.2742 5.9 5l9c:B, 5l9c:C, 5l9c:D
11 2c43:A 280 26 0.0200 0.0393 0.4231 6.4 2cg5:A
12 6e20:B 133 34 0.0255 0.1053 0.4118 7.4 6e20:A
13 1o0s:A 602 189 0.0656 0.0598 0.1905 7.7 1llq:A, 1llq:B, 1o0s:B
14 6dzs:A 431 63 0.0364 0.0464 0.3175 8.0 6dzs:B, 6dzs:C, 6dzs:D
15 2vq3:A 181 87 0.0474 0.1436 0.2989 8.2 2vq3:B
16 2yjz:A 174 69 0.0455 0.1437 0.3623 9.7 2yjz:B, 2yjz:C, 2yjz:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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