Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWH
AGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGP
LFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEAD
AETQAIAEALLEKYGQD

The query sequence (length=257) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3d2y:A 257 257 1.0000 1.0000 1.0000 0.0 2bh7:A, 3d2z:A, 2wkx:A
2 4bol:A 243 245 0.4047 0.4280 0.4245 5.38e-57 4bol:B, 4bpa:B
3 4bxd:A 255 237 0.4202 0.4235 0.4557 1.38e-56 4bxd:B, 4bxe:A, 4bxe:B
4 1j3g:A 187 127 0.1946 0.2674 0.3937 5.63e-19 2y28:A, 2y28:B, 2y28:C, 2y2b:A, 2y2b:B, 2y2b:C, 2y2d:A, 2y2d:B, 2y2d:C, 2y2e:A, 2y2e:B, 2y2e:C
5 1lba:A 146 67 0.0895 0.1575 0.3433 0.58
6 4v8m:BZ 124 61 0.0700 0.1452 0.2951 1.9 8ova:BZ, 8ove:BZ
7 3hmb:B 156 80 0.1012 0.1667 0.3250 2.1 3hmb:A, 3hmb:C, 3rdr:A
8 4krf:A 817 31 0.0428 0.0135 0.3548 4.2 4kre:A, 4kxt:A, 1si2:A, 1si3:A, 5w6v:A
9 6h7f:A 671 49 0.0700 0.0268 0.3673 4.3 6h7f:B, 6h7f:C, 6h7v:B, 6hcp:A, 6hcp:B, 6hcp:C
10 6jfc:B 161 48 0.0700 0.1118 0.3750 4.3 6jfa:A, 6jfc:A, 6jfd:C, 6jfe:B, 6jff:B, 6jfn:B
11 1jlv:A 207 86 0.1089 0.1353 0.3256 7.5 1jlv:B, 1jlv:C, 1jlv:D, 1jlv:E, 1jlv:F
12 1t3q:A 162 43 0.0584 0.0926 0.3488 8.2 1t3q:D
13 1cnz:A 363 59 0.0700 0.0496 0.3051 8.8 1cnz:B
14 5vm9:C 785 32 0.0467 0.0153 0.3750 9.4 5vm9:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218