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BioLiP
>protein
EKEWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEIQAEQWWADNRGRMYEQYNVRMV

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6l0v:A 61 61 0.9836 0.9836 0.9836 5.55e-40 6l0v:C, 6l0v:E, 6l0v:G, 6l0w:A, 6l0w:C
2 2ro1:A 189 50 0.2623 0.0847 0.3200 0.26
3 3mbe:C 192 54 0.2459 0.0781 0.2778 0.47 3mbe:G
4 4ci0:A 385 20 0.1475 0.0234 0.4500 0.87 4omf:A
5 2eek:A 220 20 0.1639 0.0455 0.5000 1.1
6 6mss:A 181 54 0.2459 0.0829 0.2778 1.3
7 3h70:A 342 19 0.1311 0.0234 0.4211 1.5
8 6z1h:A 382 31 0.1967 0.0314 0.3871 2.8
9 6z1m:A 423 32 0.1967 0.0284 0.3750 2.8 6z1m:B, 6z1m:C
10 4m00:A 501 30 0.1639 0.0200 0.3333 3.3 4m01:A, 4m01:B, 4m01:C, 4m01:D, 4m02:A, 4m03:A
11 3s6h:A 436 35 0.2295 0.0321 0.4000 8.0 4kzt:A, 4kzt:B, 4kzt:X, 4kzt:Y, 3s6g:B, 3s6g:Y, 3s6h:X, 3s6h:B, 3s6h:Y
12 1a5i:A 265 20 0.1639 0.0377 0.5000 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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