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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EKDYVVIIGSANIDVAGYSYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSGVYVDKCL
IVPGENTSSYLSLLDMLVAINDMNISNAITAEYLAQHREFIQRAKVIVADCNISEEALAWILDNAANVPVFVDPVSAWKC
VKVRDRLNQIHTLKPNRLEAETLSGIALSGRDDVAKVAAWFHQHGLNRLVLSMGGDGVYYSDIRGENGWSAPIKTNVINV
TGAGDAMMAGLASCWVDGMPFAESVRFAQGCSSMALSCEYTNNPDLSIANVISLVENA

The query sequence (length=298) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7w93:A 307 306 0.9966 0.9674 0.9706 0.0 7vsk:A, 7vte:A, 7vte:B, 7vte:C, 7vte:D, 7vtf:A, 7vtf:B, 7vtf:C, 7vtf:D, 7vtg:A, 7vtg:B, 7vtg:C, 7vtg:D, 7vva:A, 7vva:B, 7vva:C, 7vva:D
2 3kzh:A 316 306 0.3456 0.3259 0.3366 1.41e-57 3kzh:B
3 8cqx:A 300 298 0.2517 0.2500 0.2517 9.01e-11 8cqx:B, 8cqx:C, 8cqx:D, 6znx:A, 6znx:B, 6znx:D
4 1gqt:B 307 271 0.2013 0.1954 0.2214 1.61e-10 1gqt:A, 1gqt:C, 1gqt:D, 1rk2:A, 1rk2:B, 1rk2:C, 1rk2:D, 1rkd:A, 1rks:A
5 6ils:B 313 297 0.2315 0.2204 0.2323 7.98e-10 6ils:A, 6ilt:A, 6ilt:B
6 3in1:A 312 313 0.2383 0.2276 0.2268 4.19e-08 3in1:B
7 7c1y:A 356 333 0.2483 0.2079 0.2222 5.73e-08 7c1y:B, 7c1z:A, 7c1z:B
8 4xck:A 306 284 0.2248 0.2190 0.2359 6.01e-08 4xck:B, 4xck:C, 4xck:D, 4xda:A, 4xda:B, 4xda:C, 4xda:D
9 6a8a:A 327 296 0.2181 0.1988 0.2196 2.54e-07 6a8a:B, 6a8b:A, 6a8b:B, 6a8c:A, 6a8c:B, 5zwy:A, 5zwy:B
10 6znx:C 265 278 0.2148 0.2415 0.2302 7.82e-07
11 5c41:A 317 266 0.2081 0.1956 0.2331 9.13e-07 5byf:A, 5byf:B, 5c3y:A, 5c3y:B, 5c3y:C, 5c3y:D, 5c3y:E, 5c3y:F, 5c3y:G, 5c3y:H, 5c3y:I, 5c3y:J, 5c3y:K, 5c3y:L, 5c3z:A, 5c3z:B, 5c40:A, 5c40:B, 5c41:B, 5c41:C, 5c41:D, 2fv7:A, 2fv7:B, 6wjz:A, 6wjz:B, 6wk0:A, 6wk0:B, 6wk0:C, 6wk0:D
12 1tz3:A 299 307 0.2349 0.2341 0.2280 2.19e-06 1tz6:A, 1tz6:B
13 4e84:A 313 240 0.1980 0.1885 0.2458 1.02e-05 4e84:B, 4e8w:A, 4e8w:B, 4e8y:A, 4e8y:B, 4e8z:A, 4e8z:B
14 3iq0:B 308 265 0.1913 0.1851 0.2151 0.001 3iq0:A
15 3n1c:A 309 113 0.1141 0.1100 0.3009 0.002 3cqd:A, 3cqd:B, 3n1c:D, 3n1c:B, 3n1c:C, 3umo:A, 3umo:B, 3ump:A, 3ump:B, 3uqd:A, 3uqd:C, 3uqd:B, 3uqd:D, 3uqe:A, 3uqe:B
16 2dcn:A 308 244 0.1711 0.1656 0.2090 0.003 2dcn:B, 2dcn:C, 2dcn:D, 2dcn:E, 2dcn:F, 2dcn:G, 2dcn:H, 2dcn:I, 2dcn:J, 2dcn:K, 2dcn:L
17 4wjm:A 312 264 0.2215 0.2115 0.2500 0.004
18 3ie7:A 309 95 0.0940 0.0906 0.2947 0.010 3jul:A
19 7ag6:A 302 46 0.0671 0.0662 0.4348 0.017 7ag6:B, 7agh:C, 7agh:D, 7agh:A, 7agh:B, 7agk:A, 7agk:B, 7agk:C
20 3ih0:A 304 43 0.0537 0.0526 0.3721 0.054 3gbu:A, 3gbu:B, 3gbu:C, 3gbu:D
21 4s1h:A 287 130 0.0839 0.0871 0.1923 0.10 4s1h:B, 4s1i:A, 4s1i:B
22 4en4:A 310 123 0.0940 0.0903 0.2276 0.18 2ajp:A, 2ajp:B, 4en4:B, 4eoh:A, 4eoh:B, 3fhx:A, 3fhx:B, 3fhy:A, 3fhy:B, 3keu:A, 3keu:B, 8wr2:A, 8wr2:B, 2yxt:A, 2yxt:B, 2yxu:A, 2yxu:B
23 1v1a:A 301 276 0.2315 0.2292 0.2500 0.19 1v1a:B, 1v1b:A, 1v1b:D, 1v1b:B, 1v1b:C
24 2f02:A 319 255 0.1812 0.1693 0.2118 0.36 2f02:B
25 6yk0:A 309 125 0.0973 0.0939 0.2320 0.52 6yk0:B, 6yk0:C, 6yk0:D, 6yk1:A, 6yk1:B, 6yk1:C, 6yk1:D
26 1rfu:A 312 70 0.0671 0.0641 0.2857 0.54 1lhr:A, 1lhr:B, 1rft:A, 1rfu:B, 1rfu:C, 1rfu:D, 1rfu:E, 1rfu:F, 1rfu:G, 1rfu:H, 1rfv:A, 1rfv:B, 1ygj:A, 1ygk:A, 1yhj:A
27 3sig:A 265 79 0.0906 0.1019 0.3418 0.60 3sii:A
28 7fca:D 282 71 0.0738 0.0780 0.3099 0.95 7cf8:A, 7cf8:E, 7fca:A, 7fca:E
29 3go6:A 287 93 0.0872 0.0906 0.2796 1.3 3go6:B, 3go7:A, 3go7:B
30 1v1j:A 150 84 0.0772 0.1533 0.2738 2.2 2bt4:A, 2bt4:B, 2bt4:C, 2bt4:D, 2bt4:E, 2bt4:F, 2bt4:G, 2bt4:H, 2bt4:I, 2bt4:J, 2bt4:K, 2bt4:L, 2cjf:A, 2cjf:B, 2cjf:C, 2cjf:D, 2cjf:E, 2cjf:F, 2cjf:G, 2cjf:H, 2cjf:I, 2cjf:J, 2cjf:K, 2cjf:L, 1gtz:A, 1gtz:B, 1gtz:C, 1gtz:D, 1gtz:E, 1gtz:F, 1gtz:G, 1gtz:H, 1gtz:I, 1gtz:J, 1gtz:K, 1gtz:L, 1gu1:A, 1gu1:B, 1gu1:C, 1gu1:D, 1gu1:E, 1gu1:F, 1gu1:G, 1gu1:H, 1gu1:I, 1gu1:J, 1gu1:K, 1gu1:L, 1v1j:B, 1v1j:C, 1v1j:D, 1v1j:E, 1v1j:F, 1v1j:G, 1v1j:H, 1v1j:I, 1v1j:J, 1v1j:K, 1v1j:L
31 2var:A 311 85 0.0604 0.0579 0.2118 2.5 2var:B, 2var:C
32 3zs7:A 277 107 0.0872 0.0939 0.2430 2.5
33 5ygg:A 310 46 0.0537 0.0516 0.3478 2.7 5eyn:A, 5f0z:A, 5f11:A
34 1l6o:A 95 73 0.0570 0.1789 0.2329 3.2 2f0a:B, 2f0a:D, 1l6o:B, 1l6o:C, 6zbq:B, 6zbz:A, 6zbz:B, 6zbz:C, 6zbz:D, 6zc3:A, 6zc3:B, 6zc4:B, 6zc6:A, 6zc7:A, 6zc7:B, 6zc8:A, 6zc8:B
35 1obb:A 478 32 0.0436 0.0272 0.4062 3.7 1obb:B
36 5wtk:A 1215 62 0.0705 0.0173 0.3387 4.7 7dmq:A
37 6k8z:B 298 100 0.0805 0.0805 0.2400 5.4 6k8z:A, 6k90:A, 6k90:B, 6k91:A, 6k91:B, 6k92:A, 6k92:B
38 3uq6:A 345 33 0.0403 0.0348 0.3636 6.8 4dc3:A, 4dc3:B, 3uq6:B, 3uq9:A, 3uq9:B, 3vaq:A, 3vaq:B, 3vas:A, 3vas:B
39 4tsk:A 333 33 0.0436 0.0390 0.3939 7.2
40 2c49:A 299 22 0.0403 0.0401 0.5455 9.1 2c49:B
41 3ikh:A 286 63 0.0570 0.0594 0.2698 9.5 3i3y:D, 3ikh:B, 3ikh:C, 3ikh:D
42 6qva:A 310 60 0.0570 0.0548 0.2833 9.7
43 1gd9:A 388 36 0.0403 0.0309 0.3333 10.0 1dju:A, 1dju:B, 1gd9:B, 1gde:A, 1gde:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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