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BioLiP
>protein
EKDYVVIIGSANIDVAGYSHESDANPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSGVYVDKC
LIVPGENTSSYLSLLDEMLVAINDMNISNAITAEYLAQHREFIQRAKVIVADCNISEEALAWILDNAANVPVFVDPVSAW
KCVKVRDRLNQIHTLKPNRLEAETLSGIALSGRDDVAKVAAWFHQHGLNRLVLSMGGDGVYYSDIRGENGWSAPIKTNVI
NVTGAGDAMMAGLASCWVDGMPFAESVRFAQGCSSMALSCEYTNNPDLSIANVISLVENA

The query sequence (length=300) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7w93:A 307 306 0.9933 0.9707 0.9739 0.0 7vsk:A, 7vte:A, 7vte:B, 7vte:C, 7vte:D, 7vtf:A, 7vtf:B, 7vtf:C, 7vtf:D, 7vtg:A, 7vtg:B, 7vtg:C, 7vtg:D, 7vva:A, 7vva:B, 7vva:C, 7vva:D
2 3kzh:A 316 306 0.3433 0.3259 0.3366 4.71e-58 3kzh:B
3 1gqt:B 307 272 0.2067 0.2020 0.2279 4.29e-11 1gqt:A, 1gqt:C, 1gqt:D, 1rk2:A, 1rk2:B, 1rk2:C, 1rk2:D, 1rkd:A, 1rks:A
4 6ils:B 313 295 0.2333 0.2236 0.2373 2.91e-10 6ils:A, 6ilt:A, 6ilt:B
5 8cqx:A 300 300 0.2467 0.2467 0.2467 3.75e-10 8cqx:B, 8cqx:C, 8cqx:D, 6znx:A, 6znx:B, 6znx:D
6 7c1y:A 356 333 0.2500 0.2107 0.2252 6.50e-09 7c1y:B, 7c1z:A, 7c1z:B
7 4xck:A 306 284 0.2233 0.2190 0.2359 1.41e-08 4xck:B, 4xck:C, 4xck:D, 4xda:A, 4xda:B, 4xda:C, 4xda:D
8 3in1:A 312 310 0.2267 0.2179 0.2194 7.93e-08 3in1:B
9 6znx:C 265 278 0.2133 0.2415 0.2302 5.44e-07
10 5c41:A 317 266 0.2067 0.1956 0.2331 1.50e-06 5byf:A, 5byf:B, 5c3y:A, 5c3y:B, 5c3y:C, 5c3y:D, 5c3y:E, 5c3y:F, 5c3y:G, 5c3y:H, 5c3y:I, 5c3y:J, 5c3y:K, 5c3y:L, 5c3z:A, 5c3z:B, 5c40:A, 5c40:B, 5c41:B, 5c41:C, 5c41:D, 2fv7:A, 2fv7:B, 6wjz:A, 6wjz:B, 6wk0:A, 6wk0:B, 6wk0:C, 6wk0:D
11 1tz3:A 299 96 0.1033 0.1037 0.3229 2.97e-06 1tz6:A, 1tz6:B
12 4e84:A 313 240 0.1967 0.1885 0.2458 3.80e-06 4e84:B, 4e8w:A, 4e8w:B, 4e8y:A, 4e8y:B, 4e8z:A, 4e8z:B
13 6a8a:A 327 298 0.2133 0.1957 0.2148 4.29e-06 6a8a:B, 6a8b:A, 6a8b:B, 6a8c:A, 6a8c:B, 5zwy:A, 5zwy:B
14 3iq0:B 308 266 0.1900 0.1851 0.2143 1.78e-04 3iq0:A
15 3n1c:A 309 113 0.1133 0.1100 0.3009 0.002 3cqd:A, 3cqd:B, 3n1c:D, 3n1c:B, 3n1c:C, 3umo:A, 3umo:B, 3ump:A, 3ump:B, 3uqd:A, 3uqd:C, 3uqd:B, 3uqd:D, 3uqe:A, 3uqe:B
16 4wjm:A 312 254 0.2200 0.2115 0.2598 0.002
17 3ie7:A 309 95 0.0933 0.0906 0.2947 0.009 3jul:A
18 7ag6:A 302 46 0.0667 0.0662 0.4348 0.018 7ag6:B, 7agh:C, 7agh:D, 7agh:A, 7agh:B, 7agk:A, 7agk:B, 7agk:C
19 2dcn:A 308 245 0.1700 0.1656 0.2082 0.019 2dcn:B, 2dcn:C, 2dcn:D, 2dcn:E, 2dcn:F, 2dcn:G, 2dcn:H, 2dcn:I, 2dcn:J, 2dcn:K, 2dcn:L
20 3ih0:A 304 43 0.0533 0.0526 0.3721 0.055 3gbu:A, 3gbu:B, 3gbu:C, 3gbu:D
21 4s1h:A 287 192 0.1233 0.1289 0.1927 0.066 4s1h:B, 4s1i:A, 4s1i:B
22 1v1a:A 301 276 0.2267 0.2259 0.2464 0.11 1v1a:B, 1v1b:A, 1v1b:D, 1v1b:B, 1v1b:C
23 2f02:A 319 260 0.1967 0.1850 0.2269 0.11 2f02:B
24 4en4:A 310 125 0.0933 0.0903 0.2240 0.14 2ajp:A, 2ajp:B, 4en4:B, 4eoh:A, 4eoh:B, 3fhx:A, 3fhx:B, 3fhy:A, 3fhy:B, 3keu:A, 3keu:B, 8wr2:A, 8wr2:B, 2yxt:A, 2yxt:B, 2yxu:A, 2yxu:B
25 6yk0:A 309 125 0.0967 0.0939 0.2320 0.43 6yk0:B, 6yk0:C, 6yk0:D, 6yk1:A, 6yk1:B, 6yk1:C, 6yk1:D
26 1rfu:A 312 70 0.0667 0.0641 0.2857 0.54 1lhr:A, 1lhr:B, 1rft:A, 1rfu:B, 1rfu:C, 1rfu:D, 1rfu:E, 1rfu:F, 1rfu:G, 1rfu:H, 1rfv:A, 1rfv:B, 1ygj:A, 1ygk:A, 1yhj:A
27 3sig:A 265 79 0.0900 0.1019 0.3418 0.59 3sii:A
28 5ygg:A 310 272 0.1933 0.1871 0.2132 1.7 5eyn:A, 5f0z:A, 5f11:A
29 7cp7:A 430 77 0.0767 0.0535 0.2987 1.7 7cp6:A, 7cp6:B
30 7fca:D 282 72 0.0733 0.0780 0.3056 2.0 7cf8:A, 7cf8:E, 7fca:A, 7fca:E
31 3zs7:A 277 227 0.1733 0.1877 0.2291 2.1
32 2var:A 311 85 0.0600 0.0579 0.2118 2.3 2var:B, 2var:C
33 2jg1:A 318 243 0.1600 0.1509 0.1975 3.5 2jg1:B, 2jg1:C, 2jg1:D, 2jgv:B, 2jgv:D
34 1obb:A 478 32 0.0433 0.0272 0.4062 3.6 1obb:B
35 4tsk:A 333 63 0.0633 0.0571 0.3016 4.6
36 6k8z:B 298 100 0.0800 0.0805 0.2400 5.5 6k8z:A, 6k90:A, 6k90:B, 6k91:A, 6k91:B, 6k92:A, 6k92:B
37 8phi:F 453 74 0.0767 0.0508 0.3108 5.5 9bjm:A, 5ea3:F, 5ea4:F, 5ea5:F, 5ea6:F, 6eag:F, 6eah:C, 6eak:F, 8kg5:A, 8kg5:C, 8kg5:B, 3kpe:A, 7kqd:F, 5kww:F, 6ntx:B, 6vkc:F, 6vkd:F, 6vke:F
38 3go6:A 287 94 0.0833 0.0871 0.2660 5.7 3go6:B, 3go7:A, 3go7:B
39 3uq6:A 345 33 0.0400 0.0348 0.3636 6.8 4dc3:A, 4dc3:B, 3uq6:B, 3uq9:A, 3uq9:B, 3vaq:A, 3vaq:B, 3vas:A, 3vas:B
40 6sq8:B 494 117 0.1000 0.0607 0.2564 7.4 6h1b:A, 6h1b:B, 6h1b:C, 6h1b:D, 6h1b:E, 6sq8:A, 6sq8:C, 6sq8:D, 6sq8:E
41 2c49:A 299 22 0.0400 0.0401 0.5455 8.2 2c49:B
42 3ikh:A 286 63 0.0567 0.0594 0.2698 9.1 3i3y:D, 3ikh:B, 3ikh:C, 3ikh:D
43 1gd9:A 388 36 0.0400 0.0309 0.3333 9.5 1dju:A, 1dju:B, 1gd9:B, 1gde:A, 1gde:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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