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BioLiP
>protein
EKDDEEADAIYAALDKRMDERRKERREQREKEEKIQQQFSDLKRKLAEVTEEEWLSIPEV

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8qpk:N 133 68 0.9833 0.4436 0.8676 3.60e-32
2 6qw6:5J 803 69 1.0000 0.0747 0.8696 1.32e-29 8h6e:4G, 8h6j:4G, 8h6k:4G, 8h6l:4G, 8qp8:N, 6qx9:5J, 8y6o:G
3 8qoz:N 457 68 0.9833 0.1291 0.8676 1.98e-29 8qpa:N, 8qpb:N
4 8r09:N 834 68 0.9833 0.0707 0.8676 4.12e-29 6ahd:N, 5o9z:G, 8q7n:N, 8qo9:N, 8qpe:N, 8qzs:N, 8r0b:N, 8rc0:E, 8rm5:N
5 3jcm:G 734 49 0.2833 0.0232 0.3469 5.34e-05 5zwm:N, 5zwo:N
6 5nrl:J 800 33 0.2500 0.0187 0.4545 2.46e-04 5gan:J, 5gap:J
7 7d4i:RP 2084 25 0.2000 0.0058 0.4800 4.7 7d5t:RP
8 6lqs:RP 2180 25 0.2000 0.0055 0.4800 4.7 7d63:RP, 6lqp:RP, 6lqq:RP, 6lqr:RP, 6lqt:RP, 6lqu:RP, 6lqv:RP
9 7uhy:D 288 35 0.1833 0.0382 0.3143 5.9
10 3pfo:A 426 50 0.2500 0.0352 0.3000 8.0 3pfo:B
11 7oya:O1 204 38 0.1667 0.0490 0.2632 9.8 7oyb:O1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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