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BioLiP
>protein
EKCFDHAAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITCTSRNRCNDQDTRTSYRIGDTWSKKDRGNLLQCICTGNG
RGEWKCER

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2rky:C 92 89 1.0000 0.9565 0.9888 3.03e-60 2rky:A, 2rl0:A, 2rl0:B, 2rl0:D, 2rl0:F, 2rl0:K
2 2rl0:I 79 87 0.8977 1.0000 0.9080 5.19e-52
3 2rkz:C 90 89 0.5000 0.4889 0.4944 1.26e-23 3cal:A, 3cal:C, 4pz5:A, 2rkz:A, 2rkz:B, 2rkz:D, 2rkz:E, 2rkz:F, 3zrz:A, 3zrz:B
4 3ejh:A 91 78 0.3750 0.3626 0.4231 1.01e-17 3ejh:B, 3gxe:B, 3gxe:A
5 3ejh:A 91 44 0.1818 0.1758 0.3636 0.029 3ejh:B, 3gxe:B, 3gxe:A
6 3m7p:A 301 77 0.3295 0.0963 0.3766 2.33e-10
7 3m7p:A 301 42 0.1818 0.0532 0.3810 0.077
8 1o9a:A 93 47 0.2841 0.2688 0.5319 2.97e-10
9 1o9a:A 93 88 0.3636 0.3441 0.3636 1.61e-09
10 7eoz:A 482 33 0.1364 0.0249 0.3636 0.49 7eoz:B
11 6nf4:A 421 29 0.1250 0.0261 0.3793 2.0 6nf4:B
12 8fgw:A 1081 72 0.2045 0.0167 0.2500 4.0
13 2xzl:A 756 30 0.1250 0.0146 0.3667 8.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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