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BioLiP
>protein
EKARWYAVQVASGCEKRVKATLEQRVQTLDAANRILQVEIPETPIVKLKKDGSRQSAEEKVFPGYVLVRMILDDDAWQIV
RNTPHVINFVGAEQKRPYGRGRGHVKPMPLSPGEVGRIFK

The query sequence (length=120) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8syi:G 120 120 1.0000 1.0000 1.0000 1.26e-86 8urw:G
2 8e74:Z 122 91 0.3833 0.3770 0.5055 5.44e-27 8e82:Z
3 8ehq:G 110 117 0.4250 0.4636 0.4359 1.32e-25 8ej3:G, 8eoe:G, 8eof:G, 8exy:G
4 5ms0:F 181 96 0.3083 0.2044 0.3854 1.78e-21 6c6u:N, 8e3f:F, 8e5k:F, 8e5o:F, 8e6x:F, 8e6z:F, 8g31:u, 8g34:u, 6gov:G, 7py0:G, 7py1:G, 7py5:G, 7py8:G, 6tqn:G, 6tqo:G, 6vu3:AB, 6vyq:AB, 6vyr:AB, 6vys:AB, 6vyt:AB, 6vyu:AB, 6vyw:AB, 6vyx:AB, 6vyy:AB, 6vyz:AB, 6vz2:AB, 6vz3:AB, 6vz5:AB, 6vz7:AB, 6x6t:AB, 6x7f:AB, 6x7k:AB, 6x9q:AB, 6xdq:AB, 6xdr:AB, 6xgf:AB, 6xii:AB, 6xij:AB, 6z9p:G, 6z9q:G, 6z9r:G, 6ztj:CF, 6ztl:CF, 6ztn:CF
5 6xav:L 95 96 0.3000 0.3789 0.3750 2.31e-17
6 8f5g:C 175 78 0.1750 0.1200 0.2692 0.079 8f5g:A
7 8f5g:B 144 76 0.1750 0.1458 0.2763 0.15
8 6fm7:A 356 56 0.1333 0.0449 0.2857 1.3
9 8xvg:L 3485 66 0.1583 0.0055 0.2879 1.3 8xvv:L
10 7ktr:A 3042 66 0.1583 0.0062 0.2879 1.5
11 8phk:P 162 90 0.1750 0.1296 0.2333 1.5 6c6s:D, 6c6t:D, 8pen:P, 8pfj:P, 8pid:P, 8pil:P, 8pim:P, 8upo:AB, 8upr:AB, 8uql:AB, 8uqm:AB, 8uqp:AB, 8ur0:AB, 8urh:AB, 8uri:AB, 8urx:AB, 8ury:AB
12 6gw3:A 383 38 0.1250 0.0392 0.3947 4.4 6gw3:B, 6gw3:C, 6gw3:D, 7w6g:C, 7w6g:D
13 6zhh:A 883 44 0.1167 0.0159 0.3182 6.9 6zhf:A, 6zhg:A, 6zhh:B, 6zhh:C, 6zhh:D, 6zhh:E, 6zhh:F, 6zhh:G, 6zhh:H
14 6ap1:B 322 110 0.2000 0.0745 0.2182 9.2 6ap1:A, 6ap1:C, 6ap1:D, 6ap1:E, 6bmf:A, 6bmf:B, 6bmf:C, 6bmf:D, 6bmf:E, 3eih:A, 3eih:B, 3eih:C, 6ndy:A, 6ndy:B, 6ndy:C, 6ndy:D, 6ndy:E, 6oo2:A, 6oo2:B, 6oo2:C, 6oo2:D, 6oo2:E, 2qpa:A, 5uie:A, 5uie:B, 5uie:C, 5uie:D, 5uie:E, 5xmi:B, 5xmi:C, 5xmi:D, 5xmi:E, 5xmi:F, 5xmk:B, 5xmk:C, 5xmk:D, 5xmk:E, 5xmk:F
15 3cdz:A 630 32 0.1000 0.0190 0.3750 9.7 3j2q:A
16 6mf2:A 1222 32 0.1000 0.0098 0.3750 9.9 4bdv:A, 4bdv:B, 3cdz:B, 3j2q:B, 5k8d:A, 5k8d:B, 2r7e:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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