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BioLiP
>protein
EKACRHCHYITSEDRCPVCGSRDLSEEWFDLVIIVDVENSEIAKKIGAKVPGKYAIRV

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ryq:A 64 58 1.0000 0.9062 1.0000 3.40e-38 8oki:I, 8p2i:I, 3p8b:A, 3p8b:C, 3qqc:E
2 9bct:I 65 64 0.8276 0.7385 0.7500 9.02e-29
3 4zn3:B 67 57 0.4655 0.4030 0.4737 2.48e-13 3lpe:B, 3lpe:D, 3lpe:F, 3lpe:H, 4zn1:B
4 7fse:A 1040 28 0.2241 0.0125 0.4643 0.005 8ofb:A, 3oiy:A, 3p4x:A
5 4ddt:A 1102 28 0.2241 0.0118 0.4643 0.005 4ddu:A, 4ddv:A, 4ddv:B, 4ddw:A, 4ddx:A, 4ddx:B, 7fsf:A
6 3fzy:A 216 50 0.2931 0.0787 0.3400 0.15 3eeb:A, 3eeb:B, 3fzy:B, 3gcd:A, 3gcd:B, 3gcd:C, 3gcd:D, 8yja:A, 8yja:B, 8yjc:A
7 5zvq:A 194 22 0.1379 0.0412 0.3636 0.62 8ab0:F, 8ab0:E, 8bpr:E, 8bpr:F
8 6knb:B 1120 19 0.1552 0.0080 0.4737 0.92 6knc:B
9 2aou:B 289 33 0.1897 0.0381 0.3333 1.2 2aot:A, 2aot:B, 2aou:A, 2aov:A, 2aov:B, 2aow:A, 2aow:B, 2aox:A, 2aox:B, 1jqd:A, 1jqd:B, 1jqe:A, 1jqe:B
10 5z2v:B 197 17 0.1207 0.0355 0.4118 1.3 5z2v:A
11 1gwe:A 498 24 0.1552 0.0181 0.3750 1.5 1gwf:A, 1gwh:A, 1hbz:A
12 8ab0:D 157 22 0.1552 0.0573 0.4091 2.3 8bpr:D
13 7dvq:6 105 28 0.1379 0.0762 0.2857 2.7 7abg:y, 7abh:y, 7abi:y, 7b0i:D, 7b91:D, 7b92:D, 7b9c:D, 8ch6:D, 6en4:D, 7evn:D, 7evo:6, 6ff4:y, 8hk1:6, 8i0p:7, 8i0r:7, 8i0s:7, 8i0t:7, 8i0u:7, 8i0v:7, 5ife:D, 7omf:D, 7onb:D, 7opi:D, 7q3l:G, 7q4o:G, 7q4p:G, 7qtt:D, 6qx9:BP, 8r08:BP, 5syb:A, 5syb:B, 7vpx:6, 6y50:y, 8y7e:6, 5z56:6, 5z57:6, 5z58:6, 5zya:D
14 2qlt:A 251 17 0.1207 0.0279 0.4118 3.7
15 8rxh:SA 244 27 0.1724 0.0410 0.3704 4.8 8a3w:SA, 8a98:SA, 6az1:A, 8ovj:SA, 8rxx:SA, 5t2a:0
16 3o6x:A 638 49 0.2241 0.0204 0.2653 5.0 3o6x:B, 3o6x:C, 3o6x:D, 3o6x:E, 3o6x:F
17 5ijl:A 943 19 0.1379 0.0085 0.4211 5.4
18 6btm:B 948 18 0.1207 0.0074 0.3889 5.5
19 8ppt:B 1191 19 0.1379 0.0067 0.4211 6.1 8ppu:B, 8ppv:B, 6t8h:B
20 7mqa:LO 819 28 0.1897 0.0134 0.3929 7.1
21 7mq8:LO 848 28 0.1897 0.0130 0.3929 7.1 7mq9:LO
22 2x41:A 715 33 0.2414 0.0196 0.4242 8.3 2x42:A
23 7zgm:A 702 42 0.2241 0.0185 0.3095 9.1
24 4x2z:A 301 25 0.1379 0.0266 0.3200 9.1 5bz0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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