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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EIPVIEPLFTKMTEDIPGATGPVFDKNGDFYVVASPLSEALINANSLAEAYSDAGEILHIDLKTGKKTVICKPEVNGYGG
SPIGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIANKDSEGRCMQGCAYCAFDYEGNLWITAPAGGVAPADFTISLREK
FGSIYCFTTDGQMIQVDTAFQCPAGIAVRHMNDGRPYQLIVAEQPTKKLWSYDIKGPANIENKKVWGHIPGTHKGGAAGM
VFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPANLHFKPQTKTIFVTEHDNNAVWKFEWQRNGKKQYCETSKF
GIFGSL

The query sequence (length=326) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4o5t:B 326 326 1.0000 1.0000 1.0000 0.0 4o5t:A, 7zp7:A, 7zp7:B
2 3o4p:A 314 323 0.8620 0.8949 0.8700 0.0 3byc:A, 1e1a:A, 2gvu:A, 2gvv:A, 2gvw:A, 2gvx:A, 3hlh:A, 3hlh:B, 3hlh:C, 3hlh:D, 3hli:A, 3hli:B, 3hli:C, 3hli:D, 2iao:A, 2iap:A, 2iaq:A, 2iar:A, 2ias:A, 2iat:A, 2iau:A, 2iav:A, 2iaw:A, 2iax:A, 3kgg:A, 3li3:A, 3li4:A, 3li5:A, 1pjx:A
3 7riz:A 306 120 0.0951 0.1013 0.2583 8.70e-04 8djf:A, 8djz:A, 8dk0:A, 7ris:A
4 4kub:A 160 89 0.0767 0.1562 0.2809 0.098 4klv:A, 4klw:A, 4kor:A, 4kos:A, 4kot:A, 4kou:A, 4kov:A, 4kow:A, 4kox:A, 4koy:A, 4l89:A, 4l8a:A, 4m3s:A, 4oad:A, 4oae:A, 3pgp:A, 5vd6:A, 5vdb:A
5 3e9s:A 317 59 0.0583 0.0599 0.3220 0.38 2fe8:A, 2fe8:B, 2fe8:C, 7lfu:D, 7lfv:A, 7lfv:B, 4m0w:A, 3mj5:A, 3mj5:B, 4mm3:B, 4ovz:A, 4ovz:B, 4ow0:A, 4ow0:B, 7skq:A, 7skq:B, 7skr:A, 5tl6:B, 5tl6:D, 5tl7:B, 5tl7:D, 5y3e:A, 5y3q:A
6 6p2m:A 696 78 0.0706 0.0330 0.2949 0.46
7 3v64:C 338 45 0.0491 0.0473 0.3556 1.5 3v64:D
8 7mq8:LT 869 67 0.0552 0.0207 0.2687 1.5 7mq9:LT
9 7kaa:A 152 62 0.0552 0.1184 0.2903 1.9
10 7nsn:A 1371 147 0.1135 0.0270 0.2517 2.7 7nsn:B
11 4mz0:A 896 122 0.1043 0.0379 0.2787 2.8
12 4mz0:B 823 122 0.1043 0.0413 0.2787 3.3
13 2ww2:B 737 68 0.0644 0.0285 0.3088 7.4
14 3n0a:A 335 42 0.0552 0.0537 0.4286 9.5
15 5lhk:A 455 27 0.0368 0.0264 0.4444 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218