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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EIPKPVAPAPDILRCAYAELVVTDLAKSRNFYVDVLGLHVSYEDENQIYLRSFEEFIHHNLVLTKGPVAALKAMAFRVRT
PEDVDKAEAYYQELGCRTERRKDGFVKGIGDALRVEDPLGFPYEFFFETTHVERLHMRYDLYSAGELVRLDHFNQVTPDV
PRGRKYLEDLGFRVTEDIQDDEGTTYAAWMHRKGTVHDTALTGGNGPRLHHVAFSTHEKHNIIQICDKMGALRISDRIER
GPGRHGVSNAFYLYILDPDNHRIEIYTQDYYTGDPDNPTITWNVHDNQRRDWWGNPVVPSWYTEASKVLDLDGNVQEIIL
RTDDSELEVTIGADGFSFTRAGDEDGSYHGQASKGFKLG

The query sequence (length=359) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ghc:C 361 359 0.9944 0.9889 0.9944 0.0 5bwg:A, 5bwg:B, 5bwg:C, 5bwg:D, 5bwh:A, 5bwh:B, 5bwh:C, 5bwh:D, 3bza:A, 3bza:B, 3bza:C, 3bza:D, 3ecj:A, 3ecj:B, 3ecj:C, 3ecj:D, 3eck:A, 3eck:B, 3eck:C, 3eck:D, 1f1x:A, 1f1x:B, 1f1x:C, 1f1x:D, 4ghc:A, 4ghc:B, 4ghc:D, 4ghd:A, 4ghd:B, 4ghd:C, 4ghd:D, 4ghe:A, 4ghe:B, 4ghe:C, 4ghe:D, 4ghf:A, 4ghf:B, 4ghf:C, 4ghf:D, 4ghg:A, 4ghg:B, 4ghg:C, 4ghg:D, 4ghh:A, 4ghh:B, 4ghh:C, 4ghh:D, 2ig9:A, 2ig9:B, 2ig9:C, 2ig9:D, 2iga:A, 2iga:B, 2iga:C, 2iga:D, 3ojj:A, 3ojj:B, 3ojj:C, 3ojj:D, 3ojk:A, 3ojk:B, 3ojk:C, 3ojk:D, 3ojn:A, 3ojn:B, 3ojn:C, 3ojn:D, 3ojt:A, 3ojt:B, 3ojt:C, 3ojt:D, 1q0c:A, 1q0c:B, 1q0c:C, 1q0c:D, 1q0o:A, 1q0o:B, 5trx:A, 5trx:B, 5trx:C, 5trx:D, 4z6l:A, 4z6l:B, 4z6l:C, 4z6l:D, 4z6m:A, 4z6m:B, 4z6m:C, 4z6m:D, 4z6n:A, 4z6n:B, 4z6n:C, 4z6n:D, 4z6o:A, 4z6o:B, 4z6o:C, 4z6o:D, 4z6p:A, 4z6p:B, 4z6p:C, 4z6p:D, 4z6q:A, 4z6q:B, 4z6q:C, 4z6q:D, 4z6r:A, 4z6r:B, 4z6r:C, 4z6r:D, 4z6s:A, 4z6s:B, 4z6s:C, 4z6s:D, 4z6t:A, 4z6t:B, 4z6t:C, 4z6t:D, 4z6u:A, 4z6u:B, 4z6u:C, 4z6u:D, 4z6v:A, 4z6v:B, 4z6v:C, 4z6v:D, 4z6w:A, 4z6w:B, 4z6w:C, 4z6w:D, 4z6z:A, 4z6z:B, 4z6z:C, 4z6z:D
2 1f1u:A 322 319 0.7521 0.8385 0.8464 0.0 1f1r:A, 1f1r:B, 1f1u:B, 1f1v:A, 1f1v:B
3 7q2a:B 352 293 0.2368 0.2415 0.2901 3.36e-27 3lm4:A, 3lm4:B, 3lm4:C, 3lm4:D, 7q2a:A, 7q2a:C, 7q2a:D
4 5znh:A 314 291 0.2145 0.2452 0.2646 5.60e-24 5zsx:A, 5zsz:A
5 1mpy:A 307 284 0.2006 0.2345 0.2535 2.35e-23 1mpy:B, 1mpy:C, 1mpy:D
6 3hpv:A 297 294 0.2089 0.2525 0.2551 1.63e-20 3hpv:B, 3hpv:C, 3hpv:D, 3hpy:A, 3hpy:B, 3hpy:C, 3hpy:D, 3hq0:A, 3hq0:B, 3hq0:C, 3hq0:D
7 3b59:A 301 284 0.2006 0.2392 0.2535 4.68e-11 3b59:B, 3b59:C, 3b59:D, 3b59:E, 3b59:F
8 1kmy:A 288 263 0.1532 0.1910 0.2091 0.002 1han:A, 1knd:A, 1knf:A, 1lgt:A, 1lkd:A
9 8tct:A 275 81 0.0613 0.0800 0.2716 0.74
10 5nof:A 325 83 0.0696 0.0769 0.3012 1.1 5nof:B
11 6xn1:B 333 102 0.0836 0.0901 0.2941 1.7 6xn1:A, 6xn2:B, 6xn2:A
12 1dty:A 429 53 0.0474 0.0396 0.3208 2.2 1dty:B, 6ed7:A, 6ed7:B, 6ed7:C, 6ed7:D, 6ed7:E, 6ed7:F, 6ed7:G, 6ed7:H, 1mgv:A, 1mgv:B, 1mly:A, 1mly:B, 1mlz:A, 1mlz:B, 1qj3:A, 1qj3:B, 1qj5:A, 1qj5:B, 1s07:A, 1s07:B
13 6p29:A 134 132 0.0891 0.2388 0.2424 2.6 6p29:B
14 1jmc:A 238 26 0.0334 0.0504 0.4615 3.3
15 7e5v:A 372 34 0.0334 0.0323 0.3529 3.6 7e5v:B, 7e5v:C
16 8cpl:C 499 23 0.0306 0.0220 0.4783 3.7 8cpl:A, 8cpl:B, 8cpl:D, 1lp1:B, 4uox:A, 4uox:B, 4uox:C, 4uox:D, 4uoy:A, 4uoy:B, 4uoy:C, 4uoy:D
17 6jix:A 447 91 0.0641 0.0515 0.2527 4.4 6jix:B, 6jix:D, 6jix:C
18 4adb:B 401 36 0.0362 0.0324 0.3611 5.6 4adb:A, 4adb:C, 4adb:D, 4adc:A, 4adc:B, 4adc:C, 4adc:D, 4add:A, 4add:B, 4add:C, 4add:D
19 1sf2:A 425 99 0.0669 0.0565 0.2424 6.1 1sf2:B, 1sf2:C, 1sf2:D, 1sff:A, 1sff:B, 1sff:C, 1sff:D, 1szk:A, 1szk:B, 1szk:C, 1szk:D, 1szs:A, 1szs:B, 1szs:C, 1szs:D, 1szu:A, 1szu:B, 1szu:C, 1szu:D
20 7tvp:A 225 31 0.0362 0.0578 0.4194 6.3
21 1fa5:A 128 41 0.0418 0.1172 0.3659 6.3 1fa5:B, 1fa6:A, 1fa6:B
22 4z04:A 124 55 0.0446 0.1290 0.2909 8.3
23 2r7a:A 255 162 0.1003 0.1412 0.2222 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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